Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A07
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)             31   0.51 
SB_8348| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)              29   3.6  
SB_35407| Best HMM Match : PKD (HMM E-Value=1.8e-11)                   28   4.8  
SB_36304| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_21037| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_54290| Best HMM Match : Pkinase (HMM E-Value=1.3e-26)               28   6.3  
SB_23914| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)
          Length = 733

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -1

Query: 474 LLDSNGYTKTKNWNGYPPSVPLGNINLFGMHSKPSDIYNGTFPSS--NNFMRSVNGKE 307
           ++DS G     N+ G+   VP G++ L+G H+     +   FP S  N+F+  V G+E
Sbjct: 439 IVDSFGTEAQFNYAGFTEKVPGGSMALWGRHNLNLKQFMTMFPHSPDNSFLGFVVGEE 496


>SB_8348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +2

Query: 161 PKYNDNGFPITLEENWHKFYELDWFTHKITPGQNKIVR-NSNEFSLFKEDSLPLTDLMKL 337
           PK      P  + E+  KFYE + +  +I PG+ + V  N N   + ++  L L +L +L
Sbjct: 160 PKKGGRALPSDVLEHIVKFYESEEYP-RICPGKKEFVSVNENNVKVHRQKQLLLVNLHEL 218

Query: 338 LDEGK 352
             E K
Sbjct: 219 YVEYK 223


>SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)
          Length = 688

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 151 DLDNGISGNIGLNVDGN 101
           ++D G+SGN  LNVDG+
Sbjct: 397 NIDTGVSGNFSLNVDGS 413


>SB_35407| Best HMM Match : PKD (HMM E-Value=1.8e-11)
          Length = 159

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 22/86 (25%), Positives = 36/86 (41%)
 Frame = -1

Query: 495 SNGVRSWLLDSNGYTKTKNWNGYPPSVPLGNINLFGMHSKPSDIYNGTFPSSNNFMRSVN 316
           S G   +  +S GY K  NW  +P   P  +       ++P+ +YN   P + N   +V 
Sbjct: 69  SGGTVKYKNESTGYIKAYNWT-FPGGTPSTS-----TLAEPTVVYN--TPGTYNVQLTVT 120

Query: 315 GKESSLKSENSFELRTILFCPGVILC 238
           GK ++  +       TI   P +  C
Sbjct: 121 GKNNNTNNATKNNYITIHQKPNLNYC 146


>SB_36304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 200 ENWHKFYELDWFTHKITPGQNKIVRN 277
           + WHK YELD F  K +   N I+RN
Sbjct: 66  KEWHK-YELDKFMEKTSSYHNTILRN 90


>SB_21037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -3

Query: 550 VRWTVEWIAKRLVINNKGLKWCQIMATRFKRIYENKELEWISTF 419
           ++W   +I  R ++ N  +KW +     ++ I  N  +EW+  F
Sbjct: 49  IKWLRCFIVWRGIVTNSAIKWLRCFIV-WRGIVTNSAIEWLRCF 91


>SB_54290| Best HMM Match : Pkinase (HMM E-Value=1.3e-26)
          Length = 239

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +2

Query: 206 WHKFYELDWFTHKITPGQNKIVRNSNEFSLFKEDSLPLTDLMKLLD 343
           W     L  F H I P +    R   EF+   ED+L L D M  LD
Sbjct: 167 WPSIINLPHF-HSIKPKRQYRRRIREEFNFLPEDALDLFDAMLTLD 211


>SB_23914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
 Frame = -3

Query: 151 DLDNGISGNIGLNVDGNT--ERLVVES 77
           ++D G+ GN  LN+DG+   E+L+VE+
Sbjct: 340 NIDVGVGGNFTLNMDGSALIEKLLVET 366


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,926,368
Number of Sequences: 59808
Number of extensions: 369718
Number of successful extensions: 1018
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)