Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A06
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)             36   0.019
SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6)                    28   5.0  
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   28   6.6  
SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_24441| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)
          Length = 101

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +1

Query: 88  VNRIYYGRKDHFEIKLKDTSXXXXXXXXXXXXXXXFPAKKEQTRPPRIVKVGIIQHSIAI 267
           V RI YG     ++ L   +                 A  E+ R PR+V++G +Q+ I  
Sbjct: 24  VKRILYGNPVS-DLSLPAAAVSVAAELDFELAGYKIDAAAEELRQPRLVRIGAVQNKIVE 82

Query: 268 PTDRPINEQ 294
           PT+ PI +Q
Sbjct: 83  PTNMPIAKQ 91


>SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6)
          Length = 949

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 199 AKKEQTRPPRIVKVGIIQHSIAIPTDRPINEQKKA-IFDKVKKIIDV 336
           A   +  P   VK     H + IPT++PI E + + ++ K+ ++ +V
Sbjct: 762 AHDHRNNPSLAVKAQTYHHYLCIPTEKPIEEWRPSELWHKLDRLAEV 808


>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -2

Query: 342 TGDIDYLFYLIENCFFLLVNWTVGWYRDRVLNNTNFNDPRRAGLLLFSRESVRGNLKIS 166
           T +  Y+FY I N   ++V+W  G   +++ N TN+  P   G+ +    +  GN  IS
Sbjct: 556 TNEAVYMFYSIVNGTNVIVDWDFG-DTNKLTNVTNWAFP-SPGVTVIHTYTAPGNYSIS 612


>SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 398 KAKGMFHSSWKQIILTP 348
           +AKG+FH  WK+I + P
Sbjct: 365 RAKGLFHHKWKKITVEP 381


>SB_24441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 259 IAIPTDRPINEQKKAIFDKVKKIIDVAGQEGVNIICFQELWNMP 390
           IAIPT    N   ++I  ++ ++  V    GV+I C  E W  P
Sbjct: 107 IAIPTLLVCNA--RSISSRIDELDGVVAHNGVDIACITESWLTP 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,735,386
Number of Sequences: 59808
Number of extensions: 411226
Number of successful extensions: 959
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)