Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_A05
(539 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 40 0.002
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 39 0.002
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 34 0.065
SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94) 31 0.60
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2) 31 0.60
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22) 31 0.60
SB_18241| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_42208| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23) 29 3.2
SB_19363| Best HMM Match : Neuromodulin (HMM E-Value=1.4) 28 5.6
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19) 27 7.4
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/74 (24%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Frame = +3
Query: 324 MANKIYVGNKYTLDEKFTSSSRQ-YQSEVETIDF-SDTKKAADIINQWANEKTRGHIKSP 497
MAN+++ + + E+F +S++ + +E+ +D+ ++ A D +N+W +KT+ IK+
Sbjct: 89 MANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIKNL 148
Query: 498 ISDDTIDPNAAAAL 539
I + + + L
Sbjct: 149 IPEGMFNKDTILCL 162
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Frame = +3
Query: 237 WGDVNYSEATNPYISLSKTF--SEMNPDFFTMANKIYVGNKYTLDEKFTSSSRQ-YQSEV 407
W + + E + + S++ + NKI+ +++ + E+F +R+ Y SE+
Sbjct: 26 WKESEFEETHRTFKQFHEALLTSDLGYGEIQLVNKIWGHDEFEILEEFLHGTREFYHSEM 85
Query: 408 ETIDFSDTK-KAADIINQWANEKTRGHIKSPISDDTID 518
+DF + A +N W +++T+G+IK I I+
Sbjct: 86 AQVDFVNKAFDARKEVNAWVHQQTKGNIKELIPHGVIN 123
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 34.3 bits (75), Expect = 0.065
Identities = 14/58 (24%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Frame = +3
Query: 321 TMANKIYVGNKYTLDEKFTS-SSRQYQSEVETIDF-SDTKKAADIINQWANEKTRGHI 488
++AN +++ +++ ++FT + Y +++ +D+ +D + A +NQW E+T+ I
Sbjct: 51 SIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKI 108
>SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1181
Score = 32.7 bits (71), Expect = 0.20
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +3
Query: 246 VNYSEATNPYISLSKTFSEMNPDFFTMANKIYVGNKYTLDEKFTSSSRQYQSEVETIDFS 425
+ S AT P+I + T NP+FF ++ + + T DE + + + ++ I
Sbjct: 276 IKQSNATTPFIVIQNTLEVKNPNFFEVSLSA-LNQQVTWDEHYVVADVSFGNQSVVIPRR 334
Query: 426 DTKKAADI--INQWAN 467
+KK + +NQ+ N
Sbjct: 335 SSKKMEGLHDMNQYLN 350
>SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)
Length = 1047
Score = 31.1 bits (67), Expect = 0.60
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 306 NPDFFTMANKIYVGNKYTLDEKFTSSSRQYQSEV-ETIDFSDTKKAADIINQWANEKTRG 482
+PD + +K T D + + +SEV E DFS K D + + +EK R
Sbjct: 102 DPDVMERILTERIHDKLTSDSELEPLLNELKSEVAEDYDFSVRKAIVDYVLKDPSEKNRL 161
Query: 483 HIKS 494
HIKS
Sbjct: 162 HIKS 165
>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
Length = 468
Score = 31.1 bits (67), Expect = 0.60
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +3
Query: 249 NYSEATNPYISLSKTFSEMNPDFFTMA-NKIYVGNKY-TLDEKFTSSSRQY 395
NYS + Y++LSK +S ++ ++ T++ N + Y TL + + + S+ Y
Sbjct: 19 NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNY 69
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = +3
Query: 249 NYSEATNPYISLSKTFSEMNPDFFTMA-NKIYVGNKY--TLDEKFTSSSRQY 395
NYS + Y++LSK + ++ ++ T++ N + + K TL + +++ S+ Y
Sbjct: 47 NYSTLSKNYLTLSKNYLTLSKNYLTLSKNYLTLSIKVLNTLSKNYSTLSKNY 98
>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
Length = 644
Score = 31.1 bits (67), Expect = 0.60
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +3
Query: 249 NYSEATNPYISLSKTFSEMNPDFFTMA-NKIYVGNKY-TLDEKFTSSSRQY 395
NYS + Y++LSK +S ++ ++ T++ N + Y TL + + + S+ Y
Sbjct: 19 NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNY 69
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 249 NYSEATNPYISLSKTFSEMNPDFFTMANKIYVGNKYTLDEKFTSSSRQY 395
NYS + Y++LSK +S ++ ++ T++ N TL + + + S+ Y
Sbjct: 112 NYSTLSKNYLTLSKNYSTLSKNYLTLSK-----NYSTLSKNYLTLSKNY 155
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = +3
Query: 249 NYSEATNPYISLSKTFSEMNPDFFTMA-NKIYVGNKY--TLDEKFTSSSRQY 395
NYS + Y++LSK + ++ ++ T++ N + + K TL + +++ S+ Y
Sbjct: 47 NYSTLSKNYLTLSKNYLTLSKNYLTLSKNYLTLSIKVLNTLSKNYSTLSKNY 98
>SB_18241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 30.7 bits (66), Expect = 0.80
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -1
Query: 533 GSCIGIYGVIRDWRF-NMSSGLLISPLINDVS 441
GSC+ GV R W+F +++ G L+S L N V+
Sbjct: 3 GSCLWKLGVFRAWKFGSVNDGFLLSGLSNQVA 34
>SB_42208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 30.7 bits (66), Expect = 0.80
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 322 LWP-IKSTSEINILWMRNSRALPVSTKARLKLLTSAIPKKQLTSLISGLM 468
LWP IK + + W N +LP+ +L S K L L+S +M
Sbjct: 17 LWPAIKDVTHAMVTWTTNGTSLPLRMTNTYDILLSLCQKVGLVRLVSAVM 66
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 485 MSSGLLISPLINDVSCFFGIAEVNSFNLALVL 390
+ G++ S LIND C+F VN +NLA+++
Sbjct: 1803 LGQGIVESVLINDFGCYF---TVNRYNLAMMV 1831
>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
Length = 1531
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +1
Query: 319 LLWPIKSTSEINILWMRNSRALPV--STKARLKLLTSAIPKKQLTSLISGLMRRPEDIL 489
L+WP + E +I+ + +R P+ ST RLK++ + + + + + L +PE+I+
Sbjct: 1302 LVWPTPQSPEFSIVAAK-ARVAPLRQSTIPRLKMMAALVAFRLAKTTVPELKTKPENIV 1359
>SB_19363| Best HMM Match : Neuromodulin (HMM E-Value=1.4)
Length = 361
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 225 IDKFWGDVNYSEATNPYISLSKTFS 299
+D F GD+ +EA+NP+I+ K S
Sbjct: 217 MDSFTGDIPETEASNPFIAPQKVVS 241
>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
Length = 3083
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 5 FAVIAVCNVRAFYFFDHEYNRTALGDAIDKTSMKLLKEAYTS 130
+ + V ++ + F+H Y+R + AI K S L+KE TS
Sbjct: 1218 YGISNVLPLKKAFTFNHTYSRHGIFKAILKGSGNLIKEEVTS 1259
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,124,187
Number of Sequences: 59808
Number of extensions: 314354
Number of successful extensions: 793
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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