Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_B06
(574 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28333| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 1e-07
SB_24941| Best HMM Match : DPRP (HMM E-Value=1) 38 0.006
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 30 1.5
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022) 30 1.5
SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1) 29 2.0
SB_39229| Best HMM Match : Phage_holin_1 (HMM E-Value=3.5) 29 2.7
SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23) 29 2.7
SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_9849| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45) 27 8.2
SB_37360| Best HMM Match : ETS_PEA3_N (HMM E-Value=0.65) 27 8.2
>SB_28333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 53.2 bits (122), Expect = 1e-07
Identities = 28/58 (48%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +3
Query: 159 PVDDDSAVKKFGSAKAISSAQFFGEQDSR-WEKESNLSRFQGSTSISSADYFGSDGQR 329
P D A +KFG+AK+ISS QF G+ D + +S L R GST ISSAD F R
Sbjct: 331 PSSSDEAQRKFGNAKSISSDQFHGDSDDEGYAVKSRLDRMSGSTGISSADLFDEKTSR 388
>SB_24941| Best HMM Match : DPRP (HMM E-Value=1)
Length = 354
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +3
Query: 159 PVDDDSAVKKFGSAKAISSAQFFGEQD 239
P D A +KFG+AK+ISSAQF G++D
Sbjct: 327 PSSSDEAQRKFGNAKSISSAQFHGDRD 353
>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
Length = 2748
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 412 RVTPARTDSRTSSRSGAETLKAEFLCAGRCPSDPK*SADEMLVLPWNLDRF 260
RVTP + S S ++ L PSD S DE LVL W++ F
Sbjct: 1799 RVTPDKIRVSLPSASHSKKLSLTIRTQDLKPSDTDASMDEELVLSWDVQEF 1849
>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
Length = 1514
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Frame = -1
Query: 451 TTPLAREDNR---PATRVTPARTDSRTSSR----SGAETLKAEFLCAGR 326
+TP +R +R P+T TP+ T SR SSR GA+T K C R
Sbjct: 1371 STPRSRSRSRTRTPSTPFTPSTTSSRASSRGKAKGGAKTTKTTKKCTTR 1419
>SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1)
Length = 566
Score = 29.5 bits (63), Expect = 2.0
Identities = 25/114 (21%), Positives = 49/114 (42%)
Frame = +3
Query: 93 PEERAPAAPAQSAGKPRGRRTEPVDDDSAVKKFGSAKAISSAQFFGEQDSRWEKESNLSR 272
P+E+ A+P Q++ K + R+ + D +A ++ S K +S + SR + SR
Sbjct: 409 PKEKQAASPRQASRKTKTRKPQDQDKQAARQRQASRKTKTSKTQDRQATSR--RPGQASR 466
Query: 273 FQGSTSISSADYFGSDGQRPAQRNSAFNVSAPDLDEVRESVRAGVTRVAGRLSS 434
T S R A+R ++ A ++ +++ R R + S+
Sbjct: 467 ---KTKTSKPQDQDKQAARQARRKTSKQQDAEKQEQAKQAARPSQARCKTKTSN 517
>SB_39229| Best HMM Match : Phage_holin_1 (HMM E-Value=3.5)
Length = 636
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +3
Query: 36 DTVQNIEPEVSRAVHTMFTPEERAPAAPAQSAGKPRGRRTEPVDDDSAVKKF 191
D V + + E S ++ E RA P++S G PR + + VDD++A++ F
Sbjct: 130 DRVSDRKYESSTEKSSLPVEERRASTLPSRS-GTPRLTKIDVVDDNAALRAF 180
>SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 448 TPLAREDNRPATRVTPARTDSRTSSRSGA 362
TP +R +R T TP+ T SR SSR A
Sbjct: 189 TPRSRSRSRTITPSTPSTTSSRASSRGSA 217
>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
Length = 877
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 188 LLDGGVVVDGLRAASSRLAGTLCWCRRCSFLRCEHGVHGA*HLR 57
L DGGV++ + S + +C CR C+ C G+H H R
Sbjct: 216 LRDGGVMICDVCDESEPESRAVCRCRECALYLC--GIHEEGHKR 257
>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1089
Score = 28.7 bits (61), Expect = 3.6
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = +3
Query: 270 RFQGSTSISSADYFGSDGQRPAQRNSAFNV-SAPDLDEVRESVRAG-VTRVAGRLSSLAN 443
R TS + D+FGS G A+RN N AP + G TR AG + +N
Sbjct: 637 RIMSPTSPTLQDHFGSPGASGARRNLMANFGGAPARTVAMATASNGHFTRSAGAAQAASN 696
Query: 444 GVVSSIQERYG 476
S Q G
Sbjct: 697 STASVSQVHPG 707
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +3
Query: 96 EERAPAAPAQSAG--KPRGRRTEPVDDDSAVKKFGSAKAISSAQFFGEQD 239
E+ P+ S+G KP R + PV AVK S + +S A FF +
Sbjct: 190 EKAKPSRVTSSSGTDKPTTRPSAPVKGVPAVKAKSSEETLSQAHFFSTSE 239
>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1571
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -2
Query: 498 RARARISNRTAPVSRTRLHWPGR 430
+AR RI NR P+SR ++ WPGR
Sbjct: 1327 KARFRIFNRP-PLSRCKVVWPGR 1348
>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1268
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 165 DDDSAVKKFGSAKAISSAQFFGEQDSRWEKESNLSRFQGSTSISSA 302
D KK KA++ FF +DS+ +K N S+ + +SSA
Sbjct: 788 DGTKTKKKVTVDKALADVDFFSCKDSKKKKLGNSSKKTSESELSSA 833
>SB_9849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 984
Score = 27.9 bits (59), Expect = 6.2
Identities = 28/124 (22%), Positives = 48/124 (38%)
Frame = +3
Query: 90 TPEERAPAAPAQSAGKPRGRRTEPVDDDSAVKKFGSAKAISSAQFFGEQDSRWEKESNLS 269
T EE+A + ++ E +D+A+K G AKA Q++ +
Sbjct: 472 TAEEKAKECLTSKTEEKAEQQAETNGEDAAIKSEGEAKA--------PQENGGNTAGKTN 523
Query: 270 RFQGSTSISSADYFGSDGQRPAQRNSAFNVSAPDLDEVRESVRAGVTRVAGRLSSLANGV 449
+ S + ++A G D A R +A V + E VT R+ L+ G+
Sbjct: 524 KTDTSENKATASLLGKDTSLEAFRAAAKAVGSLSETEFEVKFNPDVTLQVLRIHLLSPGI 583
Query: 450 VSSI 461
+ I
Sbjct: 584 LDEI 587
>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
Length = 454
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 345 SAFNVSAPDLDEVRESVRAGVTR 413
S+F + PD D+ RES+++ VTR
Sbjct: 67 SSFFANGPDWDKYRESIKSQVTR 89
>SB_37360| Best HMM Match : ETS_PEA3_N (HMM E-Value=0.65)
Length = 861
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/81 (24%), Positives = 36/81 (44%)
Frame = -1
Query: 469 RSCIEDTTPLAREDNRPATRVTPARTDSRTSSRSGAETLKAEFLCAGRCPSDPK*SADEM 290
++ + +P++ + RP R TDS S RS +L + R P P+ + +
Sbjct: 524 KNSLSPISPISPQKQRPGFRQRTGSTDSSGSPRSSPNSL------SPRSPISPREQLETI 577
Query: 289 LVLPWNLDRFDSFSHLESCSP 227
L +L D+ + + SC P
Sbjct: 578 KTLE-SLSLDDATTPMNSCMP 597
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,939,430
Number of Sequences: 59808
Number of extensions: 239164
Number of successful extensions: 904
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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