Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_A21
(225 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.11
SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09) 27 2.4
SB_23387| Best HMM Match : REX1 (HMM E-Value=0.11) 27 2.4
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11) 27 3.2
SB_56208| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_37291| Best HMM Match : rve (HMM E-Value=4.8e-19) 26 4.2
SB_57671| Best HMM Match : RVT_1 (HMM E-Value=0) 26 5.6
SB_53367| Best HMM Match : RVT_1 (HMM E-Value=0) 26 5.6
SB_28476| Best HMM Match : RVT_1 (HMM E-Value=1.1e-19) 26 5.6
SB_18309| Best HMM Match : Exo_endo_phos (HMM E-Value=2.3e-09) 26 5.6
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 26 5.6
SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09) 26 5.6
SB_51419| Best HMM Match : DNA_ligase_A_C (HMM E-Value=8.6) 26 5.6
SB_49175| Best HMM Match : RVT_1 (HMM E-Value=1.8e-32) 26 5.6
SB_21419| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.6
SB_11838| Best HMM Match : RVT_1 (HMM E-Value=0) 26 5.6
SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.4
SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.4
SB_20243| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.7
SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.7
SB_2652| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.7
SB_35678| Best HMM Match : Involucrin (HMM E-Value=3.6) 25 9.7
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 25 9.7
>SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1916
Score = 31.5 bits (68), Expect = 0.11
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Frame = +1
Query: 4 RPPLTRTSSIVTITP----WTEN*ISSRLRPHRWTSTPVG----RSSIRLSLSP 141
+PPL+R S +++ P W +S +L P R TP+G R+ RL+L+P
Sbjct: 807 QPPLSRLRSRISVFPLRSDWNRMSVSDKLDPQRTPRTPLGLKSERTVHRLTLNP 860
>SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09)
Length = 843
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 80 RSLEEIQFSVQGVIVTIDEVRVSGGR 3
+ +++I FSV GV V +D +RV R
Sbjct: 484 QDIKDISFSVNGVRVQLDNIRVDKAR 509
>SB_23387| Best HMM Match : REX1 (HMM E-Value=0.11)
Length = 1011
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/48 (25%), Positives = 28/48 (58%)
Frame = -2
Query: 164 ETSAGFPRGLNERRIELLPTGVEVQRCGRSLEEIQFSVQGVIVTIDEV 21
E S F + ++E+ +L+ ++Q C +++EE+ +V+ TI+ +
Sbjct: 810 EDSEKFMKEVSEKEKKLIAMEDKLQECNKTIEELSANVRSSQETIESL 857
>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
Length = 1771
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 73 RLRPHRWTSTPVGRSSIRLSLS 138
R++ HRWT TP+ S+ L ++
Sbjct: 959 RVKKHRWTHTPMTGDSLALEIT 980
>SB_56208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 88 RWTSTPVGRSSIRL-SLSPRGNPALVSRFPNISNLK 192
R T +P+ S + S+SPR +P SR+ +SNL+
Sbjct: 173 RATGSPLAESELPADSISPRLSPYDTSRYSKLSNLE 208
>SB_37291| Best HMM Match : rve (HMM E-Value=4.8e-19)
Length = 214
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 140 GLNERRIELLPTGVEVQRCGRSLE 69
GL ER ++ TGV V GRSL+
Sbjct: 172 GLAERLVQSFKTGVNVDLTGRSLQ 195
>SB_57671| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 533
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 80 RSLEEIQFSVQGVIVTIDEVRV 15
+ +++I FSV GV V +D +RV
Sbjct: 78 QDIKDISFSVNGVRVQLDNIRV 99
>SB_53367| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1025
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 80 RSLEEIQFSVQGVIVTIDEVRV 15
+ +++I FSV GV V +D +RV
Sbjct: 590 QDIKDISFSVNGVRVQLDNIRV 611
>SB_28476| Best HMM Match : RVT_1 (HMM E-Value=1.1e-19)
Length = 332
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 43 TPWTEN*ISSRLRPHRWTSTPVGRSSIRLSLSPRG-NPAL 159
TPW + + + R + + P + S+R+ + PR N AL
Sbjct: 99 TPWVSSMLVADKRKEKDRANPPSKDSVRICIDPRDLNKAL 138
>SB_18309| Best HMM Match : Exo_endo_phos (HMM E-Value=2.3e-09)
Length = 895
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 80 RSLEEIQFSVQGVIVTIDEVRV 15
+ +++I FSV GV V +D +RV
Sbjct: 639 QDIKDISFSVNGVRVQLDNIRV 660
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 27 INRNDYSLDGKLNLFKTPTTSLD 95
I+ + Y LDG LN+ KT +LD
Sbjct: 854 IHNSTYDLDGNLNIVKTFRDTLD 876
>SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09)
Length = 748
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 80 RSLEEIQFSVQGVIVTIDEVRV 15
+ +++I FSV GV V +D +RV
Sbjct: 552 QDIKDISFSVNGVRVQLDNIRV 573
>SB_51419| Best HMM Match : DNA_ligase_A_C (HMM E-Value=8.6)
Length = 291
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 80 RSLEEIQFSVQGVIVTIDEVRV 15
+ +++I FSV GV V +D +RV
Sbjct: 267 QDIKDISFSVNGVRVQLDNIRV 288
>SB_49175| Best HMM Match : RVT_1 (HMM E-Value=1.8e-32)
Length = 823
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 80 RSLEEIQFSVQGVIVTIDEVRV 15
+ +++I FSV GV V +D +RV
Sbjct: 79 QDIKDISFSVNGVRVQLDNIRV 100
>SB_21419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 759
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +3
Query: 15 HTDFINRNDYSLDGKLNLFKTPTTSLDFNAGWKKFDT 125
H D+ NR + + + +D N GW +FDT
Sbjct: 107 HADYYNRKGWYSIILQGVVDSRYRFIDINVGWPEFDT 143
>SB_11838| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1009
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 80 RSLEEIQFSVQGVIVTIDEVRV 15
+ +++I FSV GV V +D +RV
Sbjct: 522 QDIKDISFSVNGVRVQLDNIRV 543
>SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 668
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 21 DFINRNDYSLDGKLNLFKTPTTSLDFNAGW 110
+ I R DY L+G+ +TP+ +D + W
Sbjct: 114 ELIERGDYQLEGRTRFMRTPSV-MDRHRLW 142
>SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 939
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 140 GLNERRIELLPTGVEVQRCGRSLEEIQ 60
GL ER ++ TGV GRSL+ Q
Sbjct: 604 GLAERLVQSFKTGVRADLTGRSLQHKQ 630
>SB_20243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 100 TPVGRSSIRLSLSPRGNPALVSRFPNISNLKQSL 201
TPV +SSI+ S P RF ++S LKQ L
Sbjct: 41 TPVAKSSIQSSTDSCLKPPQGYRFQDMSILKQVL 74
>SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1352
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = -3
Query: 181 KYLENEKLVLGSHEDLMKGVSNFFQPALKSSDVVGVLKRFSFP 53
KY++++ + + +DL + V++F + + + +L+RF FP
Sbjct: 46 KYVQSKHIHVYPCDDL-RWVASFMKDGKTFEEAIALLRRFHFP 87
>SB_2652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 594
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 100 TPVGRSSIRLSLSPRGNPALVSRFPNISNLKQSL 201
TPV +SSI+ S P RF ++S LKQ L
Sbjct: 41 TPVAKSSIQSSTDSCLKPPQGYRFQDMSILKQVL 74
>SB_35678| Best HMM Match : Involucrin (HMM E-Value=3.6)
Length = 241
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 18 TDFINRNDYSLDGKLNLFKTPTTSLD 95
TD + N ++LDGK+NL +P T D
Sbjct: 57 TDALKCNGWNLDGKINL--SPLTKQD 80
>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4002
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 76 LRPHRWTSTPVGRSSIRLSLSPRGNPALVSRF 171
L P RW PVG S R P L+ RF
Sbjct: 1073 LPPKRWKRKPVGWLGCFRDTSVRALPILLGRF 1104
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,200,057
Number of Sequences: 59808
Number of extensions: 99019
Number of successful extensions: 350
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 16,821,457
effective HSP length: 52
effective length of database: 13,711,441
effective search space used: 301651702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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