Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A12
         (470 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22730| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_21963| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_22730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 10  KECIPRLTLRWPHRKDGWTAFRII*SWWM 96
           K CIPRL L +  R +G   FR   S W+
Sbjct: 183 KSCIPRLLLHFERRGEGTILFRDYFSLWL 211


>SB_21963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 504

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
 Frame = +3

Query: 126 LNDADLPSPAEF--ICTLWIPQAKYAVRKEAIYYPGPISTTPEMPTA-ADMQLAAAVGSK 296
           +  A LPS +EF  +  L   + KYA     + +PGPI+   E+ +A AD   +  +   
Sbjct: 1   MQSALLPSESEFYKLYGLTNDKLKYAKPDAVVMHPGPINRGVEIESAVADGPRSLILDQV 60

Query: 297 GNQLVPEANVTISKXNFKKVSGQNNISIXHL*STFNMC--VTCLYVYADKFI 446
            N +     V +S     +++ +N I   H+    N    VT LY+   K I
Sbjct: 61  TNGIAVRMAV-MSMAMSGQMAEKNLIKNGHVIDPKNQLDQVTDLYIQDGKVI 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,213,018
Number of Sequences: 59808
Number of extensions: 326852
Number of successful extensions: 818
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)