Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A20
         (844 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.29 
SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.38 
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)                   30   2.0  
SB_50855| Best HMM Match : Ras (HMM E-Value=0)                         30   2.7  
SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3)            29   4.7  
SB_54473| Best HMM Match : DLIC (HMM E-Value=0)                        29   6.2  
SB_42369| Best HMM Match : NACHT (HMM E-Value=3e-05)                   29   6.2  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     29   6.2  
SB_12780| Best HMM Match : SAC3_GANP (HMM E-Value=3.7e-07)             29   6.2  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              29   6.2  
SB_57631| Best HMM Match : Gb3_synth (HMM E-Value=5.1)                 29   6.2  
SB_17640| Best HMM Match : DUF329 (HMM E-Value=6.7)                    28   8.2  

>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 26/74 (35%), Positives = 31/74 (41%)
 Frame = -3

Query: 470 GPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRLQVPGWRPGEQARRLEGDGAVSS 291
           GPPR   P   +   G PF PR     PP  G  R  +      P  +  R + D   S 
Sbjct: 404 GPPRPMGPPGPH---GPPFGPRGP---PPHGGPPRGPMGPGPGMPPMRPGRFDHDSEHSR 457

Query: 290 DRPDRDRALRTSQR 249
           DR DRDR  R+  R
Sbjct: 458 DRADRDRLARSFDR 471


>SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 493

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 29/99 (29%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
 Frame = -3

Query: 509 RRVCQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRLQVPGWRPGE 330
           RR+ Q   P   + PP   PP+ NY     P       A PP     +     P + P  
Sbjct: 353 RRILQGQPPPGTYYPP---PPQGNYNQYPVPGGQNYAGAPPPPYYPPQEYQAPPPYNPNS 409

Query: 329 QARRL-----EGDGAVSSDRPDRDRALRTSQRRCKSHYP 228
            AR L     E     S +      AL  S R C+ HYP
Sbjct: 410 LARLLVFLLREESSENSQENMAFTGALTRSLRTCQQHYP 448


>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
          Length = 627

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 491 ARPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPV 381
           A P +   PPR  PP++       P PP A+V+ PP+
Sbjct: 148 AHPSITQPPPRHSPPQTPVP-PPPPLPPFAQVSLPPL 183


>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
          Length = 733

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -3

Query: 545 NRADRLDGSEAGRRVCQAARPRLQHGPPRVEPP 447
           +R+DR D   A RR     RPRLQ   PR +PP
Sbjct: 545 DRSDRYDDHGADRRDAPKERPRLQL-QPRTKPP 576


>SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3)
          Length = 321

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/40 (47%), Positives = 20/40 (50%)
 Frame = -1

Query: 631 YRPKQPWPVSICVSRKVRHPWSRPTQSARTGRTASTVRRP 512
           Y P  P   SICV    R  W RPT  A  G  +ST RRP
Sbjct: 119 YEPNHPTE-SICVLAS-RKRW-RPTDDAGFGPNSSTKRRP 155


>SB_54473| Best HMM Match : DLIC (HMM E-Value=0)
          Length = 1401

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 29/116 (25%), Positives = 39/116 (33%), Gaps = 2/116 (1%)
 Frame = -3

Query: 590 PEGEASVVAAHPVRENRADRLDGSEAGRRVCQAARPRLQHGPPRVEPP--RSNYTFAGAP 417
           P  E S V+        A+ L G++ G        PR++ G      P  R      G  
Sbjct: 596 PRVEGSRVSYRCPGWRGAECLTGTQGGGEQSVLPVPRVESGRVSYRYPGWRGAECLTGTQ 655

Query: 416 FPPRAEVATPPVIGSERLRLQVPGWRPGEQARRLEGDGAVSSDRPDRDRALRTSQR 249
                 V   P +   R+  + PGWR  E     +G G  S     R    R S R
Sbjct: 656 GGEEQSVLQVPRVEGSRVSYRCPGWRGAECLTGTQGGGEQSVLPVPRVERSRVSYR 711


>SB_42369| Best HMM Match : NACHT (HMM E-Value=3e-05)
          Length = 396

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 245 CKSHYPMTYFIMVIQKTRIIKKHKGCFTSFLSL 147
           CK   P T+ +M  +K R+  + K CF + L +
Sbjct: 84  CKKALPQTFILMTSRKNRMQAEVKNCFDASLEI 116


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 467 PPRVEPPRSNYTFAGAPFPPRAEVATPP 384
           PP   PP +++T  G P PP  + A  P
Sbjct: 283 PPTRGPPSNSFTTQGPPLPPSRDQAPAP 310


>SB_12780| Best HMM Match : SAC3_GANP (HMM E-Value=3.7e-07)
          Length = 436

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 313 SRRRACSPGRHPGTWRRRRSLPITGGVATSALGGKGAPA 429
           +RR  C   R PGT   + SLP  G   ++ L G   P+
Sbjct: 91  TRRIICRAARDPGTLLSKPSLPYPGYTPSNQLAGTTRPS 129


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 467 PPRVEPPRSNYTFAGAPFPPRAEVATPP 384
           PP   PP +++T  G P PP  + A  P
Sbjct: 195 PPTRGPPSNSFTTQGPPLPPSRDQAPAP 222


>SB_57631| Best HMM Match : Gb3_synth (HMM E-Value=5.1)
          Length = 180

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/40 (47%), Positives = 20/40 (50%)
 Frame = -1

Query: 631 YRPKQPWPVSICVSRKVRHPWSRPTQSARTGRTASTVRRP 512
           Y P  P   SICV    R  W RPT  A  G  +ST RRP
Sbjct: 74  YEPNHPIE-SICVLAS-RKRW-RPTDDAGFGPNSSTKRRP 110


>SB_17640| Best HMM Match : DUF329 (HMM E-Value=6.7)
          Length = 221

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
 Frame = -3

Query: 566 AAHPVRENRADRLDGSEAGRRVCQAARPR-LQHGPPR---VEPPRSNYTFAGAPFPPRAE 399
           AAH   E  AD L  ++     C    P  L+  PPR     P   +Y  + A    R +
Sbjct: 79  AAHQELELAADALGDAQPPSNSCSPGDPLVLERPPPRWSSNSPYSESYYNSLAVVLQRRD 138

Query: 398 VATPPVIGSERLRLQVP--GWRPGEQAR 321
              P V    RL    P   WR  E+AR
Sbjct: 139 WENPGVTQLNRLAAHPPFASWRNSEEAR 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,301,586
Number of Sequences: 59808
Number of extensions: 399582
Number of successful extensions: 1422
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)