Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A10
         (849 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_33603| Best HMM Match : PHD (HMM E-Value=0.00046)                   29   4.8  
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_3753| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.3  
SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3142

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -1

Query: 693 GSCKLPVQAFFSLVVSNDHRYSCEDCGNW-HARC 595
           G  K P  A      SN     C++CG W HA+C
Sbjct: 205 GPVKYPCSACTKPTKSNQRAICCDECGQWTHAKC 238


>SB_33603| Best HMM Match : PHD (HMM E-Value=0.00046)
          Length = 396

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 693 GSCKLPVQAFFSLVVSNDHRYSCEDCGNW-HARC 595
           G  K P  A      SN     C++CG+W HA+C
Sbjct: 97  GPVKHPCGACGKPTKSNQKAICCDECGHWMHAKC 130


>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 693 GSCKLPVQAFFSLVVSNDHRYSCEDCGNW-HARC 595
           G  K P  A      SN     C++CG+W HA+C
Sbjct: 97  GPVKHPCGACGKPTKSNQKAICCDECGHWMHAKC 130


>SB_3753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 976

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 645 NDHRYSCEDCGNWHARC 595
           +D+RY CEDCG  ++ C
Sbjct: 704 SDYRYLCEDCGKPYSTC 720


>SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 43  GTSERFARHLPATLLDKILVTYRAAERSR 129
           G  ER  R  P   LDK++ + RAAE SR
Sbjct: 152 GGRERLLRERPVPSLDKVVESLRAAEISR 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,875,472
Number of Sequences: 59808
Number of extensions: 396253
Number of successful extensions: 1201
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)