Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A04
         (848 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)              30   2.7  
SB_1076| Best HMM Match : Phage_tail_S (HMM E-Value=2.7)               29   3.6  
SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39)                   29   4.8  
SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  

>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
          Length = 531

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
 Frame = +3

Query: 294 FETKEKADSITTYLTNAGYNKYDFWTSGNNLGTDMFLWMSTGLPFNATFNYMRRLPIDAP 473
           + T +   +   Y TN  Y+  D +++ ++  T   L     L       + RRL     
Sbjct: 70  YNTSDDYSTNNDYSTNNDYSTSDEYSTNDDYNTKQRLQHQRRLQHQQRLQHQRRLQHQRR 129

Query: 474 AQHADDSMDP--LDVPQGSTAP-QRTARHGRYSRTEHVMT 584
            QH   +  P     P  +TAP   TA +  YS  +   T
Sbjct: 130 LQHKTTTTAPTTTTAPATNTAPATTTAPNNDYSTNDDYRT 169


>SB_1076| Best HMM Match : Phage_tail_S (HMM E-Value=2.7)
          Length = 834

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = -3

Query: 621 SGRSEL*ARCSH*S*RVPSWNTDHVGR-CVVEQC--FLVVR-LEGPCCHQHAGQEHRW 460
           SG++E   R  + S  +PSW+T+H+    ++++C  +L  R  +  CC  + GQ   W
Sbjct: 541 SGKTEWARRSRYRSGDLPSWDTNHLAEVIIIDECCKYLATRPCQVVCCGDY-GQVPPW 597


>SB_34492| Best HMM Match : Ank (HMM E-Value=1.4e-39)
          Length = 894

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 480 HADDS-MDPLDVPQGSTAPQRTARHGRYSRTEHVMTNG 590
           H+D S ++  +   G+TA     RHG +   EH++ NG
Sbjct: 446 HSDKSFVNSREHSSGNTALHMACRHGHFDIVEHLLENG 483


>SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = -2

Query: 583 VMTCSVLEYRPCRAVRCGAVLPCGTSRGSML----SSACWAGASMGSL 452
           V  C  +    CR V+C  V+ C  S+   L    SS  WA  + GSL
Sbjct: 361 VCACRYVRSVACRYVQCVHVVMCAKSKRQRLSRQRSSHSWASCARGSL 408


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,459,493
Number of Sequences: 59808
Number of extensions: 565935
Number of successful extensions: 1510
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)