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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A02
         (857 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               231   5e-61
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     34   0.17 
SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   29   3.7  
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  29   4.8  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.8  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               28   8.5  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)            28   8.5  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  231 bits (565), Expect = 5e-61
 Identities = 113/206 (54%), Positives = 132/206 (64%)
 Frame = +2

Query: 182 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 361
           VFKAPIRPDLVN VH +++KN RQPY V+K AGHQTSAESWGTGRAVARIPRVRGGGTHR
Sbjct: 24  VFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQTSAESWGTGRAVARIPRVRGGGTHR 83

Query: 362 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 541
           SGQGAFGNMCRGGRMFAPTK WR+WH                          ARGH IEK
Sbjct: 84  SGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSALAASALPALIMARGHRIEK 143

Query: 542 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQXXXXXXXXXXXXXXXXXXX 721
           I E+PLV++D ++ + KT  AV  L+ + A+ D+ K   S+                   
Sbjct: 144 IAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKG 203

Query: 722 PLIIXXXDQGLTRAFRNIPGVXXLNV 799
           PLII   DQGL +AFRN+PGV   +V
Sbjct: 204 PLIIYNNDQGLRQAFRNLPGVELQHV 229


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 398 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWF 285
           HH  CY  H    Y Y+ H H  + + H  YP  RH++
Sbjct: 20  HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54


>SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 706 TTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYNQ 557
           +T + HF     KT R +H+K        P E     GL+D+LD  G+ Q
Sbjct: 18  STVLHHFIDKHAKTPRFLHMKP-----NGPGEGGGSSGLLDMLDAAGFEQ 62


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 383 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWFGDQ 276
           Y +HP  T+ YHH  H +   ++ ++P + H +  Q
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRYHQQ 447



 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 383 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWFGDQPP 270
           Y +HP  T+ YH H      + H ++P + H +  Q P
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTHRYQYQHP 268


>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 357 WVPPPRTRGIRATARPVPHD 298
           W+PP RTR  R T  PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 398 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRY 306
           HH     RH  R + +HHH H E+ ++H RY
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH-RY 353


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 407 TYVHHDTCYRRHPDRTYGYHHHGHA 333
           TY H DT  R+HPD     H   HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147


>SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 34/101 (33%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
 Frame = -1

Query: 344  HGHAEFGQQ----HVRYPMIRHWF----GDQPPCXXXXXXXXSWT*KREHH*PGPDVWAP 189
            HG AE   Q      R   +  WF    G  PP          W  +R H   G DV  P
Sbjct: 809  HGDAEVADQATEDQFRMDRLAGWFFRTPGTPPPPRLATCQVRLW--RRSHF--GKDVKRP 864

Query: 188  *IRXGRGLAAPCTVS--LFSEYTDTKGRATDRLISLL*RSY 72
                GRGLA        L  +YTD KGR   +LI+ L  S+
Sbjct: 865  -SDTGRGLAQMRENQNILPRKYTDAKGRIRQKLINGLYDSF 904


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 287  TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 403
            T +E   +G ++ R PR  RGGG    G G  G   RGGR
Sbjct: 983  TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 206  DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 331
            D+ NDV ++++  +  PY +     H T  E   TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +2

Query: 305 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 433
           G GR + R P   GGG  R   G +G M  GG    P   W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 176  GRGLAAPCTVSLFSEYTDTKGRATDRLI 93
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
          Length = 715

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 200 RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAV 322
           RP       +SM K  R+PY  + +E GH+    S  T R V
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNV 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,011,021
Number of Sequences: 59808
Number of extensions: 532335
Number of successful extensions: 1632
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1585
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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