Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A24
         (936 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55186| Best HMM Match : TPR_2 (HMM E-Value=0.91)                   100   3e-21
SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)                   32   0.77 
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_52798| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)                    29   5.4  

>SB_55186| Best HMM Match : TPR_2 (HMM E-Value=0.91)
          Length = 571

 Score = 99.5 bits (237), Expect = 3e-21
 Identities = 51/116 (43%), Positives = 71/116 (61%)
 Frame = +1

Query: 49  KMSANKENNLVQAYLELNKFCQSSDYERALKAAGKILQIAPNEQKAFHCKVVCFLQLHNF 228
           KM+AN   +L Q + EL++  +  +Y +A K A KILQ +P ++ AFHCKVVC +Q   F
Sbjct: 66  KMAANTSPSLPQLFSELDRLGKEGNYSKAQKIANKILQESPADEDAFHCKVVCLIQQSYF 125

Query: 229 KEALATLTNAKNSALAADLLFEKAYTQYRLNSPKEALQTVDSAPELTPALKELRAQ 396
            EAL  + +     +   L FEKAY  YRLN  +EA+QT+ + P+  P  KEL AQ
Sbjct: 126 HEALDVINSGSKKGIKV-LPFEKAYALYRLNMTQEAIQTLQALPDPGPKEKELLAQ 180


>SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)
          Length = 1110

 Score = 31.9 bits (69), Expect = 0.77
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
 Frame = +1

Query: 259 KNSALAADLLFEKAYTQYRLNSPKEALQTVDSAP----ELTPALKELRAQILYRLEQYQD 426
           KN  L    LF +  T  R N  +     +DS      E+  AL++L + +    E  Q+
Sbjct: 692 KNDNLQTGNLFGETLTNLRENLSQTRQMVIDSRTQFKHEIVKALEKLSSTLKKASELTQE 751

Query: 427 CYNL-YRDLLKNTTDEYEDERK 489
             +  Y+ +L+  TD+Y+ E+K
Sbjct: 752 RTSKEYKKILREVTDKYDKEKK 773


>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 26/84 (30%), Positives = 37/84 (44%)
 Frame = +1

Query: 226  FKEALATLTNAKNSALAADLLFEKAYTQYRLNSPKEALQTVDSAPELTPALKELRAQILY 405
            +KE L  LT  +    AA     KA T Y  N+  E  +  D   +    LK++RAQ L 
Sbjct: 1167 YKETLHELTKTQEELRAAS---SKAATGYE-NTISEIKKEKDMLYDEVKHLKDIRAQQLE 1222

Query: 406  RLEQYQDCYNLYRDLLKNTTDEYE 477
             +E+ +      RD+  N   E E
Sbjct: 1223 EIEELKRQIEHMRDVQNNYQKELE 1246


>SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
 Frame = +1

Query: 85  AYLELNKFCQSSDYERALKAAGKILQIAPNEQKA-----FHCKVVCFLQLHNFKEALATL 249
           A L+ NK+ +   YE+A+K   + +++ P E K      +  +   + Q++ F+  +   
Sbjct: 144 AKLKGNKYFKGCKYEQAIKCYTEAIELCPPENKQDLSTFYQNRAAAYEQMNQFENVVEEA 203

Query: 250 TNA-KNSALAADLLFEKAYTQYRLNSPKEALQ 342
           T A + ++     L  +A    +L   +E LQ
Sbjct: 204 TKALELNSKYTKALMRRARALEKLERKQECLQ 235


>SB_52798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = -3

Query: 166 LSAVFSLQLLKLFHSHCSGKIYL 98
           LSAV  LQLL++FH+ C  K YL
Sbjct: 42  LSAVTPLQLLQVFHALCVSKGYL 64


>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1805

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 21/57 (36%), Positives = 28/57 (49%)
 Frame = +1

Query: 316  LNSPKEALQTVDSAPELTPALKELRAQILYRLEQYQDCYNLYRDLLKNTTDEYEDER 486
            L  P  A   V+   EL  A+K +  +I  R  Q +       DLL N+TD+YE ER
Sbjct: 1187 LKRPSTATSLVELDRELD-AVKRIGKEIDERKSQLE-LITRRGDLLANSTDQYESER 1241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,838,454
Number of Sequences: 59808
Number of extensions: 468728
Number of successful extensions: 1080
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2729039029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)