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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B01_e2_03.seq
         (1560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56664| Best HMM Match : bZIP_1 (HMM E-Value=0.00033)                63   7e-10
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)               35   0.20 
SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.27 
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.47 
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.62 
SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.82 
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              32   1.1  
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)               32   1.1  
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   1.4  
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.4  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.9  
SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024)                  31   1.9  
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              31   1.9  
SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.9  
SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    31   3.3  
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.3  
SB_6324| Best HMM Match : MCM (HMM E-Value=0)                          30   4.4  
SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078)              30   4.4  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.4  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     30   5.8  
SB_37070| Best HMM Match : Vicilin_N (HMM E-Value=4.8)                 30   5.8  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              30   5.8  
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.8  
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  30   5.8  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               29   7.6  
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.6  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.6  

>SB_56664| Best HMM Match : bZIP_1 (HMM E-Value=0.00033)
          Length = 652

 Score = 62.9 bits (146), Expect = 7e-10
 Identities = 32/66 (48%), Positives = 42/66 (63%)
 Frame = +1

Query: 472 KLFQDFLEEFKEDNELKYEKHAKELLKPELSTLEVSFDDVEKYNQNLATTIIEEYYRIYP 651
           +L Q     F+ D E+KY   A+EL++PE +TL VS+ DVE YN  LAT I E+YYRI  
Sbjct: 452 RLKQQRQSMFELDGEVKYLADAQELIRPERNTLVVSYQDVESYNAQLATLIQEDYYRIRE 511

Query: 652 FLNQAI 669
             +Q I
Sbjct: 512 LTSQKI 517



 Score = 35.9 bits (79), Expect = 0.088
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +2

Query: 764 HKXREXTTAKIGTLIRXXGQMXRTHP 841
           ++ RE T+ KIG+L+R  GQ+ RTHP
Sbjct: 507 YRIRELTSQKIGSLLRISGQVVRTHP 532


>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
          Length = 867

 Score = 34.7 bits (76), Expect = 0.20
 Identities = 17/38 (44%), Positives = 18/38 (47%)
 Frame = +1

Query: 1096 TEPEXPPARXPXXXPGPLXGPXGGPXPRAXXPPXPXPP 1209
            T+P  PP R P   P P   P   P PR   PP P PP
Sbjct: 202  TQPPPPPPRPPPSPPPPPPPPSPSP-PRPPPPPPPSPP 238


>SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 34.3 bits (75), Expect = 0.27
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
 Frame = +1

Query: 412 VADTFATKSQV--KDEVGVRCQKLFQDFLEEFKEDN-ELKYEKHAKELLKPELSTLEVSF 582
           V+D F ++ Q   +D   V  +K F++FL EF E      Y    K+        LEV  
Sbjct: 11  VSDPFGSEDQSDERDLNRVSAKKRFKEFLREFHEGTFAFPYRDQLKQHYNLGQYYLEVDL 70

Query: 583 DDVEKYNQNLATTIIEEYYRIYPFLNQA 666
           +D+  +++NLA  + +      P    A
Sbjct: 71  EDLSSFDENLADKLRKNPSEYLPLFETA 98


>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 33.5 bits (73), Expect = 0.47
 Identities = 20/42 (47%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 1102 PEXPPARXPXXXP-GPLXGPXGGPXPRAXXPPXPXPPGXXGG 1224
            P  PPA  P   P  P   P GGP P A  PP P PP   GG
Sbjct: 175  PAAPPAPPPPGAPAAPPAPPFGGP-PSA-PPPPPAPPVGGGG 214


>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 33.1 bits (72), Expect = 0.62
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +1

Query: 1102 PEXPPARXPXXXPGPLXGPXGGPXPRAXXPPXPXPP 1209
            P  PPA  P   P P   P   P P A  P  P PP
Sbjct: 54   PPSPPAAAPAAPPPPAAAPAAPPPP-AAPPAAPPPP 88



 Score = 30.3 bits (65), Expect = 4.4
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = +1

Query: 1111 PPARXPXXXPGPLXGPXGGPXPRAXXPPXPXPP 1209
            PPA  P   P P   P   P P    PP P PP
Sbjct: 67   PPAAAPAAPPPPAAPPAAPPPP----PPLPAPP 95


>SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 32.7 bits (71), Expect = 0.82
 Identities = 18/58 (31%), Positives = 19/58 (32%)
 Frame = +1

Query: 1036 RXPXRNXPXGGXPGXXKXXXTEPEXPPARXPXXXPGPLXGPXGGPXPRAXXPPXPXPP 1209
            R   +  P    P   K     P  P    P   P P   P   P P A  PP P PP
Sbjct: 193  RVHKKTKPSAAAPKQQKATPVNPPEPDYLEPT--PPPPAAPAPPPPPAAAPPPPPPPP 248


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
 Frame = -2

Query: 1229 PXPPXXPGGXGXGGXXARGXGPP--XGPXRGPGXXXGXRAGGXSGSV 1095
            P PP  PG  G  G      GPP   GP   PG   G    G  GS+
Sbjct: 1694 PGPPGLPGPQGIPGYPGAPAGPPGRDGPMGPPGPSGGQGPPGDMGSM 1740



 Score = 31.1 bits (67), Expect = 2.5
 Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 1102 PEXPPARXPXXXPGPLXGPXGGPXPRAXXPPX--PXPPGXXGGXG 1230
            P  PPA  P   PGP  GP G P P+    P   P PPG  G  G
Sbjct: 1664 PPPPPAPGP---PGP-DGPMGLPGPQGPDGPKGPPGPPGLPGPQG 1704


>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
          Length = 341

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 17/40 (42%), Positives = 17/40 (42%)
 Frame = +1

Query: 1102 PEXPPARXPXXXPGPLXGPXGGPXPRAXXPPXPXPPGXXG 1221
            P  PPA      P P   P G P P    PP P PPG  G
Sbjct: 292  PPPPPADGSAPAPPPPPPPGGAPPPPP--PPPPPPPGDGG 329


>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2248

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
 Frame = +1

Query: 1042 PXRNXPXGGXPGXXKXXXTEPEXPPAR-XPXXXPGPLXGPXGGPXPRAXXPPXPXPP 1209
            P R+ P G  P         P  PP    P   P P+  P  GP P    PP   PP
Sbjct: 2156 PARHSPSGPSP-----LGAPPSVPPPMGAPPSGPPPMGAPPSGPPPMG-TPPSGHPP 2206



 Score = 30.3 bits (65), Expect = 4.4
 Identities = 17/58 (29%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
 Frame = +1

Query: 1042 PXRNXPXGGXPGXXKXXXTEPEXPPAR-XPXXXPGPLXGPXGGPXPRAXXPPXPXPPG 1212
            P    P G  P         P  PP    P   P P+  P  G  P    P  P P G
Sbjct: 2161 PSGPSPLGAPPSVPPPMGAPPSGPPPMGAPPSGPPPMGTPPSGHPPMGAPPMGPPPSG 2218



 Score = 29.5 bits (63), Expect = 7.6
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +1

Query: 1102 PEXPPARXPXXXPGPLXGPXGGPXPRAXXPPXPXPPG 1212
            P   PAR     P PL  P   P P    P  P P G
Sbjct: 2152 PPMGPARHSPSGPSPLGAPPSVPPPMGAPPSGPPPMG 2188


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = +1

Query: 1096 TEPEXPPARXPXXXPGPLXGPXGGPXPRAXXPPXPXP 1206
            T P  PP   P   P P  GP   P P    PP P P
Sbjct: 364  TPPPPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPPP 400



 Score = 30.3 bits (65), Expect = 4.4
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +1

Query: 1102 PEXPPARXPXXXPGPLXGPXGGPXPRAXXPPXPXPP 1209
            P  PP   P   P P  GP   P P    PP P PP
Sbjct: 376  PPPPPTNGPPPPPPPTNGPPPPPPP-TNGPPPPPPP 410



 Score = 29.9 bits (64), Expect = 5.8
 Identities = 18/55 (32%), Positives = 18/55 (32%)
 Frame = +1

Query: 1042 PXRNXPXGGXPGXXKXXXTEPEXPPARXPXXXPGPLXGPXGGPXPRAXXPPXPXP 1206
            P  N P    P         P  PP   P   P P  GP   P P    PP P P
Sbjct: 360  PTNNTP----PPPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPPPTNGPPPPPPP 410


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 28/126 (22%), Positives = 33/126 (26%), Gaps = 5/126 (3%)
 Frame = +3

Query: 1197 TXPPGXXGGXRXSXGXKPKDPLXGXXXXQXDXPXXAPGREPPXEGRXXPXPXXXXRPLRQ 1376
            + PP    G   S    P     G    Q   P   PG++P   G   P      +    
Sbjct: 712  STPPVQQSGAPGSPAGSPSGTSAGNPQQQPPPPGQLPGQQPGQAG-GRPGLNPQGQVTTA 770

Query: 1377 NRXPXGGRXRGTXRXXGXAPXXXPTG--ATXTRLXXATPXXXPGP---PAXXXAXPPPXA 1541
               P       T    G  P   P G   T T    + P     P   P       PP  
Sbjct: 771  TTAPSSNPNESTTPTTGGRPGLNPQGQVTTATTAPSSNPNESTTPTTGPTTGTTALPPGV 830

Query: 1542 XPXTXP 1559
               T P
Sbjct: 831  TTITTP 836


>SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024)
          Length = 286

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 22/89 (24%), Positives = 23/89 (25%)
 Frame = +3

Query: 1281 QXDXPXXAPGREPPXEGRXXPXPXXXXRPLRQNRXPXGGRXRGTXRXXGXAPXXXPTGAT 1460
            + D    A G E   EG           P      P       T           PT A 
Sbjct: 98   EDDSKGGAAGAEEKEEGEGG-GDTPTTAPTTAATTPTTPTTAPTTPTTPTTAATTPTTAA 156

Query: 1461 XTRLXXATPXXXPGPPAXXXAXPPPXAXP 1547
             T    A     P P A   A PPP   P
Sbjct: 157  TTPAAGAAAAAAPPPAAAAAAPPPPVGKP 185


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = -2

Query: 1211 PGGXGXGGXXARGXGPPXGPXRGPGXXXGXRAGGXSG 1101
            PGG G G     G GP  G  RG G   G   GG  G
Sbjct: 5    PGGWGRGSGGGWGQGPGGGWGRGQGGGMGRGPGGGWG 41


>SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 911

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
 Frame = +1

Query: 1057 PXGGXPGXXKXXXTEPEXPPARX-PXXXPGPLXGPXGGPXPRAXXPPXPXPPGXXG 1221
            P GG P         P  PP    P   PG    P  G  P    PP P P G  G
Sbjct: 597  PSGGYPQPSPPHGGHPHHPPPTGYPGGYPGTHTAPPAGGYPTGQHPP-PPPAGYPG 651


>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +1

Query: 1096 TEPEXPPARXPXXXPGP--LXGPXGGPXPRAXXPPXPXPPGXXGGXG 1230
            T P  PP   P   PGP    GP G P P+    P   PPG  G  G
Sbjct: 28   TPPPPPPYEAPPPPPGPPGPDGPPGFPGPQGPNGP-KGPPGLPGPPG 73


>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = +1

Query: 1057 PXGGXPGXXKXXXTEPEXPPARXPXXXPGPLXGPXGGPXPRAXXPPXPXPP 1209
            P    P         P  PP   P   P P   P   P P    PP P PP
Sbjct: 136  PNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPP 186



 Score = 29.5 bits (63), Expect = 7.6
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = +1

Query: 1102 PEXPPARXPXXXPGPLXGPXGGPXPRAXXPPXPXPP 1209
            P  PP   P   P     P   P P A  PP P PP
Sbjct: 202  PNPPPPNPPYPPPPNAPNPPYPPPPNAPNPPYPPPP 237


>SB_6324| Best HMM Match : MCM (HMM E-Value=0)
          Length = 1592

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = +1

Query: 463 RCQKLFQDFLEEFKEDNELKYEKHAKELLKPELSTLEVSFDDVEKYNQNLATTIIEEYYR 642
           + ++   +F  +  E  E KY +   ++   E   L +  DD+ + +Q+LA  + E   R
Sbjct: 558 KAKRFLAEFYVQGDEGKEFKYGEQLIKIAHREQQELLIELDDIAEIDQDLAENVKENTRR 617

Query: 643 IYPFLNQAI 669
                  AI
Sbjct: 618 YKRLFEDAI 626


>SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078)
          Length = 539

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +1

Query: 1105 EXPPARXPXXXPGPLXGPXGGPXPRAXXPPXPXPPGXXG 1221
            + PPA  P     PL      P P +  PP P P G  G
Sbjct: 415  DRPPAPPPLEEKTPLDKRASLPPPASGRPPAPIPSGTMG 453


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 17/56 (30%), Positives = 18/56 (32%)
 Frame = +1

Query: 1063 GGXPGXXKXXXTEPEXPPARXPXXXPGPLXGPXGGPXPRAXXPPXPXPPGXXGGXG 1230
            GG P          + PP       P P     GGP P       P PPG   G G
Sbjct: 544  GGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGPPPPGAGQEGPPPPGAGQGGG 599


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 15/45 (33%), Positives = 16/45 (35%)
 Frame = +2

Query: 1082 GSXPXPNXRXXXPGTPXPXPGPXXGRXGALXPGQXXPPXXPPRGQ 1216
            GS P P  R   P  P P  GP          G   P   PP G+
Sbjct: 203  GSAPPPPERSSGPPPPPPGRGPSQRSLAPPPTGSSRPLPAPPPGE 247


>SB_37070| Best HMM Match : Vicilin_N (HMM E-Value=4.8)
          Length = 319

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
 Frame = +1

Query: 412 VADTFATKSQVK---DEVGVRCQKLFQDFLEEFKEDNELKYEKHAKELLKPELSTLEVSF 582
           +AD   TK + +   D++ +R          + +++ +L  E+  K +L+    T   SF
Sbjct: 1   MADALGTKVECEGNDDDMFLRIVNSGVTIKSQQRDEPDLSSEQKIK-ILEEIKKTNPASF 59

Query: 583 DDVEKYNQNLATTIIEEYYRIYPFLNQAIXNYVLGFADXGLKKRITKQR 729
             + ++ Q+L T  +E +  +Y      + NY +GF    +KK + +Q+
Sbjct: 60  --LMRFGQSLVTKDLEYFESLYK--QNTLTNYEIGFRLKEIKKHLDQQK 104


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 15/45 (33%), Positives = 16/45 (35%)
 Frame = +2

Query: 1082 GSXPXPNXRXXXPGTPXPXPGPXXGRXGALXPGQXXPPXXPPRGQ 1216
            GS P P  R   P  P P  GP          G   P   PP G+
Sbjct: 115  GSAPPPPERSSGPPPPPPGRGPSQRSLAPPPTGSSRPLPAPPPGE 159


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 18/56 (32%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
 Frame = +1

Query: 1042 PXRNXPXGGXPGXXKXXXTEPEXPPARXPX-XXPGPLXGPXGGPXPRAXXPPXPXP 1206
            P    P    PG        P  P  R P    P P   P G P PR   P  P P
Sbjct: 404  PGAPHPRVPPPGASHQRVRPPGAPHPRVPPPGAPHPRFPPPGAPHPRVPPPGAPHP 459



 Score = 29.9 bits (64), Expect = 5.8
 Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
 Frame = +1

Query: 1036 RXPXRNXPXGGXPGXXKXXXTEPEXPPARXPX-XXPGPLXGPXGGPXPRAXXPPXPXP 1206
            R P    P    PG        P  P  R P    P P   P G P PR   P  P P
Sbjct: 422  RPPGAPHPRVPPPGAPHPRFPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHP 479


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = +1

Query: 1102 PEXPPARXPXXXPGPLXGPXGGPXPRAXXPPXPXPP 1209
            P+ PP   P   P P   P   P P A  PP P PP
Sbjct: 393  PQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPP 428


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -2

Query: 1208 GGXGXGGXXARGXGPPXGPXRGPGXXXGXRAGGXSG 1101
            GG G       G GP  G  RGPG   G   GG  G
Sbjct: 321  GGWGRMQGGGMGRGPGGGLGRGPGGGWGRMQGGGMG 356


>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = +1

Query: 1096 TEPEXPPARXPXXXPGPLXGPXGGPXPRAXXPPXPXP 1206
            T P   P+  P   P P   P   P P     P P P
Sbjct: 467  TSPISNPSPRPHPSPHPSSNPSPNPSPNPSSDPSPNP 503


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
 Frame = -2

Query: 1211 PGGXGXGGXXARGXGPPXGPXRGPGXXXGXRA--GGXSGSVXXNFXXPGXPP 1062
            PG  G  G   R    P GP   PG         GG S S+  +   P  PP
Sbjct: 3359 PGPTGPKGEQGRSISGPPGPPGAPGTSWNDSIVNGGLSNSLLESLRGPPGPP 3410


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,285,166
Number of Sequences: 59808
Number of extensions: 612911
Number of successful extensions: 1925
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1779
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5094195218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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