Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_A07_e49_01.seq
(1453 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32676| Best HMM Match : adh_short (HMM E-Value=1.2e-05) 77 3e-14
SB_39030| Best HMM Match : adh_short (HMM E-Value=5.5e-34) 53 7e-07
SB_5928| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 1e-05
SB_44869| Best HMM Match : adh_short (HMM E-Value=5.4e-23) 48 2e-05
SB_3252| Best HMM Match : adh_short (HMM E-Value=4.8e-10) 47 3e-05
SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1) 46 8e-05
SB_15764| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 2e-04
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33) 42 0.001
SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15) 42 0.002
SB_23903| Best HMM Match : adh_short (HMM E-Value=7.3e-34) 41 0.002
SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 38 0.015
SB_32367| Best HMM Match : adh_short (HMM E-Value=1.7e-07) 37 0.046
SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.25
SB_44870| Best HMM Match : adh_short (HMM E-Value=5.4e-11) 34 0.25
SB_26063| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.33
SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.57
SB_38785| Best HMM Match : adh_short (HMM E-Value=2.4e-06) 33 0.75
SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.0
SB_58732| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.3
SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.3
SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32) 30 5.3
SB_56681| Best HMM Match : adh_short (HMM E-Value=0.035) 29 9.3
>SB_32676| Best HMM Match : adh_short (HMM E-Value=1.2e-05)
Length = 201
Score = 77.4 bits (182), Expect = 3e-14
Identities = 46/96 (47%), Positives = 54/96 (56%), Gaps = 8/96 (8%)
Frame = +3
Query: 210 YGRKNVLFCRLDVTDYPQFEEAFVMTIEEFNRVDILINNAGFM---NDRL----WELEVD 368
Y + VLF + DVT PQ E AF T + F R+DIL NNAG ND L W+ +D
Sbjct: 53 YSKHRVLFIKCDVTSQPQMEAAFQRTKDVFGRLDILCNNAGIAVRENDLLRSGAWKTIID 112
Query: 369 VNLNGVIRGTLLAYRFMG-KDRGXHGGIIVNTASTA 473
+N+ GVI GTLL MG HGG IVN AS A
Sbjct: 113 INVKGVILGTLLGLDHMGVSGAKGHGGTIVNVASLA 148
>SB_39030| Best HMM Match : adh_short (HMM E-Value=5.5e-34)
Length = 527
Score = 52.8 bits (121), Expect = 7e-07
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 9/145 (6%)
Frame = +3
Query: 138 EPRYQYAISILTLANK*LMNWVAKYGRKNVLFCR-LDVTDYPQFEEAFVMTIEEFNRVDI 314
E R++ ++ L K + + + LF R LDV+ EEA EE R+DI
Sbjct: 28 EKRFRVYATMRNLDKKGSLESACQNALGDTLFIRELDVSSDDSVEEALNAIYEEEGRIDI 87
Query: 315 LINNAGFMNDRLWELEV--------DVNLNGVIRGTLLAYRFMGKDRGXHGGIIVNTAST 470
L+NNAG + + E + + N GV+R ++ + + + H G I+N +ST
Sbjct: 88 LVNNAGISHIGMLETQTQSLVKETFNTNFFGVLR---MSKAVIPRMKSDHSGHIINISST 144
Query: 471 AFAKPQVSTPIYTATNYAIVGLTRA 545
A T +Y A+ +A+ GL+ +
Sbjct: 145 AGHTGMPFTGLYCASKFAVEGLSES 169
>SB_5928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 609
Score = 48.8 bits (111), Expect = 1e-05
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +3
Query: 207 KYGRKNVLFCRLDVTDYPQFEEAFVMTIEEFNRVDILINNAGFMNDRLWELEVDVNL 377
K+G +V F DV++ Q ++AF T+ +DI+ NNAG +++ W +DVNL
Sbjct: 44 KHGSGSVSFISCDVSNQDQLKDAFWETVSTHGHLDIVFNNAGILDEERWSKTLDVNL 100
>SB_44869| Best HMM Match : adh_short (HMM E-Value=5.4e-23)
Length = 228
Score = 48.0 bits (109), Expect = 2e-05
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Frame = +3
Query: 213 GRKNVLFCRLDVTDYPQFEEAFVMTIEEFNRVDILINNAGFMNDR--LWEL---EVDVNL 377
G+ N + +D+TD +E + F D ++NNAGF+N LWE+ E D +
Sbjct: 50 GKPNQFYV-VDITDDSVVKEWATNVCKSFGPPDFVLNNAGFVNQNAPLWEITAEEFDKVV 108
Query: 378 NGVIRGTLLAYR-FMGKDRGXHGGIIVNTASTAFAKPQVSTPIYTATNYAIVGLTRA 545
+ ++G+ R F+ K G+IVN +S + Y AT + I GLTRA
Sbjct: 109 DVNLKGSANVIRSFLPKMIKAGKGVIVNFSSGYGKAGKAKMAPYCATKWGIEGLTRA 165
>SB_3252| Best HMM Match : adh_short (HMM E-Value=4.8e-10)
Length = 289
Score = 47.2 bits (107), Expect = 3e-05
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Frame = +3
Query: 237 RLDVTDYPQFEEAFVMTIEEFNRVDILINNAGFMNDR--------LWELEVDVNLNGVIR 392
+LD+ + P+ A I+ R+D+L+NNAG M W V+++G
Sbjct: 94 QLDLGNLPEGALALEKLIQRLGRIDVLVNNAGAMTKAPFLDMAFDEWRKIFTVDVDGAFL 153
Query: 393 GTLLAYRFMGKDRGXHGGIIVNTASTAFAKPQVSTPIYTATNYAIVGLTRA 545
+ +A R M K GG I+N S P YTA +A+ GLT+A
Sbjct: 154 CSQIAARQMVKQ--GQGGRIINITSVHEHTPLPDASAYTAAKHALGGLTKA 202
>SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1)
Length = 256
Score = 46.0 bits (104), Expect = 8e-05
Identities = 20/61 (32%), Positives = 36/61 (59%)
Frame = +3
Query: 195 NWVAKYGRKNVLFCRLDVTDYPQFEEAFVMTIEEFNRVDILINNAGFMNDRLWELEVDVN 374
N A++G F DV + + EA T+++ +++DIL NNAG ++++ W V++N
Sbjct: 82 NLEAQFGPGTAEFIECDVCNREKLSEAIRQTVKDHSKLDILCNNAGIIDEKNWPKSVELN 141
Query: 375 L 377
L
Sbjct: 142 L 142
>SB_15764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 44.8 bits (101), Expect = 2e-04
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Frame = +3
Query: 240 LDVTDYPQFEEAFVMTIEEFNRVDILINNAGFM--------NDRLWELEVDVNLNGVIRG 395
+DVTDY EA E +RVD+L N AG + +++ W+L +D+N+ + R
Sbjct: 67 VDVTDY----EAIKKFASEVDRVDVLFNCAGLVLGGNIEECSEKQWDLTMDLNVKSMFR- 121
Query: 396 TLLAYRFMGKDRGXHGGIIVNTASTAFA-KPQVSTPIYTATNYAIVGLTRAYGDQY 560
+ + K R G I+N AS A + K + Y + A++G T+A Y
Sbjct: 122 --MTKECIPKMRQQGSGSIINMASVASSIKGAPNRFAYGTSKAAVIGFTKAIAADY 175
>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
Length = 717
Score = 42.3 bits (95), Expect = 0.001
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Frame = +3
Query: 243 DVTDYPQFEEAFVMTIEEFNRVDILINNAGFMNDRL--------WELEVDVNLNGVIRGT 398
D Q ++ I+ F R+D+++NNAG + D+ W+L V+L G T
Sbjct: 73 DYNSVEQGDQVVETAIKAFGRIDVVVNNAGILRDKSILRMSELDWDLVQRVHLKGSFLVT 132
Query: 399 LLAYRFMGKDRGXHGGIIVNTASTAFAKPQVSTPIYTATNYAIVGLTRAYGDQ 557
A+ M K + G I+ T ST+ Y+A +VGL+ +
Sbjct: 133 RAAWPHMKKQK---FGRIIMTTSTSGIYGNFGQANYSAAKLGLVGLSNTLAQE 182
>SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15)
Length = 355
Score = 41.5 bits (93), Expect = 0.002
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Frame = +3
Query: 219 KNVLFCRLDVTDYPQFEEAFVMTIEEFNRVDILINNAGFMNDRL------WELE---VDV 371
+++L +DVT+Y + E ++ FN++DILINN+G L E+E +D+
Sbjct: 101 QDILVLPMDVTEYDKHTELVRSVLDHFNKIDILINNSGRSQRGLAVETPGIEVEKAMLDL 160
Query: 372 NLNGVIRGTLLAYRFMGKDRGXHGGIIVNTASTAFAKPQVSTPIYTATNYAIVG 533
N V+ T M + + H IV T+S A + Y AT +A+ G
Sbjct: 161 NFLAVVSLTKAVLPHMIERKNGH---IVVTSSVAGKIGAPMSTSYNATKFAVQG 211
>SB_23903| Best HMM Match : adh_short (HMM E-Value=7.3e-34)
Length = 253
Score = 41.1 bits (92), Expect = 0.002
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Frame = +3
Query: 243 DVTDYPQFEEAFVMTIEEFNRVDILINNAGFMNDRL---------WELEVDVNLNGVIRG 395
DV D Q + F + F R+D+L+NNAG + ++ W+ N+ G
Sbjct: 65 DVADERQVMQLFARLDQHFGRLDVLVNNAGILETQMRLEQMELARWQRVFATNVFGSFLC 124
Query: 396 TLLAYRFMGKDRGXHGGIIVNTASTA 473
A + M +G +GG IVN +S A
Sbjct: 125 CREAIKRMSTRQGGNGGAIVNLSSAA 150
>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 1750
Score = 38.3 bits (85), Expect = 0.015
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Frame = +3
Query: 294 EFNRVDILINNAGFMNDRLWELEVDVNLNGVIRGTLLAY-----RFMGKDRGXHGGIIVN 458
E VDIL+NNAG ++ + + D + I LLA+ F+G+ + G IV
Sbjct: 1296 EVGDVDILVNNAGILHGKRLLDQTDAQIQKAIELNLLAHFWTSRSFLGRMLEQNQGHIVT 1355
Query: 459 TASTAFAKPQVSTPIYTATNYAIVGLTRAYGDQ-YHVNLTGCK 584
+S + + P Y A+ Y VG A + Y + G K
Sbjct: 1356 ISSVSGSFPTAFQVEYCASKYGAVGFHDALSHELYTLGKDGVK 1398
>SB_32367| Best HMM Match : adh_short (HMM E-Value=1.7e-07)
Length = 384
Score = 36.7 bits (81), Expect = 0.046
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Frame = +3
Query: 285 TIEEFNRVDILINNAGF--------MNDRLWELEVDVNLNGVIRGTLLAYRFMGKDRGXH 440
T+ + R+D L+NN G M+ + W +D NLNG AYR + H
Sbjct: 109 TLSSYGRIDYLVNNGGGQFLCPVSNMSYKGWNAVIDTNLNGTFLCCTEAYRLWMSE---H 165
Query: 441 GGIIVN 458
GG IVN
Sbjct: 166 GGSIVN 171
>SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 34.3 bits (75), Expect = 0.25
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 201 VAKYGRKNVLFCRLDVTDYPQFEEAFVMTIEEFNRVDILINNAGFMNDR 347
V G +V +LD+ + E EE +RVD+LINNAG++ +
Sbjct: 117 VQSAGNMDVEVKKLDLASFASIREFAKEVNEEESRVDVLINNAGYLGSQ 165
>SB_44870| Best HMM Match : adh_short (HMM E-Value=5.4e-11)
Length = 236
Score = 34.3 bits (75), Expect = 0.25
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 11/132 (8%)
Frame = +3
Query: 213 GRKNVLFCRLDVTDYPQFEEAFVMTIEEFNRVDILINNAGFMND--RLWELE-------V 365
G++ F +D+++ ++ + +F +LINN+G N WE+ V
Sbjct: 54 GKEKRQFYVVDISNDEAVKQWSQQVMLDFGAPSLLINNSGVTNKNANFWEVPTEEFNKVV 113
Query: 366 DVNLNGVIRGTLLAYRFMGKDRGXHGGIIVNTAS--TAFAKPQVSTPIYTATNYAIVGLT 539
D+N+ G +L + G+IVN S P+V+ Y T +A+ GL+
Sbjct: 114 DINIKGT--ANVLRHFLPSMIEAKRKGVIVNFTSGWGRCVAPEVAP--YCTTKWALEGLS 169
Query: 540 RAYGDQYHVNLT 575
+A ++ LT
Sbjct: 170 KALAEELPEYLT 181
>SB_26063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 33.9 bits (74), Expect = 0.33
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Frame = +3
Query: 237 RLDVTDYPQFEEAFVMTIEEFNRVDILINNAGFMNDRLWELEV--------DVNLNGVIR 392
+LDVT E R+D+L+NNAG + E +VN GV+R
Sbjct: 255 QLDVTSDESVTEVLQSIYSAERRIDVLVNNAGVGLIGVLETHTMSLVREMFNVNFFGVVR 314
Query: 393 GTLLAYRFMGKDRGXHGGIIVNTASTAFAKPQVSTPIYTATNYAIVGLTRA 545
L + K +G G I+N S + IY ++ +A+ G+ +
Sbjct: 315 ---LTKAVIPKMKGNPSGHIINIPSIGGIRGVPFNAIYCSSKFAVEGMAES 362
>SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 33.1 bits (72), Expect = 0.57
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Frame = +3
Query: 240 LDVTDYPQFEEAFVMTIEEFNRVDILINNAGF---------MNDRLWELEVDVNLNGVIR 392
LDV + +E+ R+D+L+NNAG D + ++ + N+ G++R
Sbjct: 94 LDVCSDESVKAVVAEIVEKEGRIDVLVNNAGIGLFCVPECATTDAINKV-FEPNVYGLMR 152
Query: 393 GTLLAYRFMGKDRGXHGGIIVNTASTAFAKPQVSTPIYTATNYAIVGLTRA 545
T M K R H +VN S + IY A+ +A+ G A
Sbjct: 153 MTNAVIPHMKKQRAGH---VVNIGSVLGIVGTPFSEIYCASKFAVEGYAEA 200
>SB_38785| Best HMM Match : adh_short (HMM E-Value=2.4e-06)
Length = 267
Score = 32.7 bits (71), Expect = 0.75
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 348 LWELEVDVNLNGVIRGTLLAYRFMGKDRGXHGG---IIVNTASTAFAKPQVSTPIYTATN 518
L+E + VN G L M K+ GG +I NTAS A Q+ Y+A+
Sbjct: 119 LFEKVLKVNTTGSFNVIRLVAEQMIKNEPTEGGERGVITNTASVAAFDGQMGQAAYSASK 178
Query: 519 YAIVGLT 539
IVG+T
Sbjct: 179 GGIVGMT 185
>SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 614
Score = 30.7 bits (66), Expect = 3.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 225 VLFCRLDVTDYPQFEEAFVMTIEEFNRVDILINNAGFM 338
V + +LDVT E + E++ +DIL+NNAG +
Sbjct: 74 VEYHKLDVTSNDSIHELTLHVQEKYGGLDILVNNAGIL 111
>SB_58732| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 29.9 bits (64), Expect = 5.3
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +2
Query: 113 TVKNSLKQGAKVSICDIDSDVGEQIVDELGS 205
TV+ ++GA V+I DI+ ++G+Q+ +L S
Sbjct: 40 TVERLAREGASVAILDINDELGQQVETDLRS 70
>SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 29.9 bits (64), Expect = 5.3
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 381 GVIRGTLLAYRFMGKDRGXHGGIIVNTASTAFAKPQVSTPIYTATNYAIVGL 536
GV+ G ++ R + KDRG H I V S A P + ++ T +A + L
Sbjct: 369 GVVLGGFISDRLV-KDRGPHARIWVLVGSQIIAAPFAAGALFLPTPWAFISL 419
>SB_11966| Best HMM Match : adh_short (HMM E-Value=4.1e-32)
Length = 728
Score = 29.9 bits (64), Expect = 5.3
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Frame = +3
Query: 243 DVTDYPQFEEAFVMTIEEFNRVDILINNAGFMNDRLWELEVDVNLNGVIRGTLLAY---- 410
DV + E+ ++ V ILINNAG + + + + ++ + LA+
Sbjct: 92 DVRKKDEVEKVANAVEDQAGNVTILINNAGVVTGKKFLNCSESDVMRTFQVNSLAHIWTI 151
Query: 411 -RFMGKDRGXHGGIIVNTASTAFAKPQVSTPIYTATNYAIVGLTRAYGDQYH 563
RF+ + G IV+ AS A V Y A+ +A VGL A + H
Sbjct: 152 QRFIPSMMEKNRGHIVSIASVAGYFGLVGCVDYCASKFAAVGLIEALRREIH 203
>SB_56681| Best HMM Match : adh_short (HMM E-Value=0.035)
Length = 437
Score = 29.1 bits (62), Expect = 9.3
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +3
Query: 210 YGRKNVL---FCRLDVTDYPQFEEAFVMTIEEFNRVDILINNAGFM 338
+ R+NV+ + LD++D E + N++++L+NNAG M
Sbjct: 19 FSRRNVIKVRYIHLDLSDLSSVREFVKSFHQSENQLNVLVNNAGVM 64
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,364,469
Number of Sequences: 59808
Number of extensions: 398654
Number of successful extensions: 818
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4671635246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -