Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30017
         (648 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   3.6  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    24   3.6  
DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.           24   4.8  
AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    23   8.3  
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    23   8.3  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 2    LPSVSRFPRRSHSGENALVKDFCLQALTY-LHYLSM 106
            +P +S FP  + SGE  +  D C Q +    H L M
Sbjct: 894  IPKISSFPIFTRSGEVKVSLDLCPQRVKLSAHQLEM 929


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 80  MPEDKSL*PVHSPRYDYGAE 21
           +PEDK    V + RYDY  E
Sbjct: 939 IPEDKEFFGVKNTRYDYNKE 958


>DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = -1

Query: 369 ITGLRLLSKFYIHSR--NYI 316
           +TG+ LL +FY HS   NY+
Sbjct: 44  LTGVHLLDRFYTHSALLNYL 63


>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 35  HSGENALVKDFCLQALTYLH 94
           H+G NA+VK+F  +    +H
Sbjct: 517 HTGRNAMVKEFATKLKHLVH 536


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 35  HSGENALVKDFCLQALTYLH 94
           H+G NA+VK+F  +    +H
Sbjct: 517 HAGRNAMVKEFAAKLKHLVH 536


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,079
Number of Sequences: 2352
Number of extensions: 10132
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)