Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20103
         (781 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    27   0.86 
CR954257-6|CAJ14157.1|  375|Anopheles gambiae RrnaAD, ribosomal ...    23   8.0  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    23   8.0  

>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative
           FGF-signaling promoter protein.
          Length = 1197

 Score = 26.6 bits (56), Expect = 0.86
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 218 TSNVRTHGPQYYITHCQYHNRKRSSKNVNSLKNQTLLKKSP 340
           TS  R H PQ Y    Q H  + +      +KN+T + + P
Sbjct: 143 TSTHRHHLPQQYQQQQQQHQLEHNGGREQMMKNETSIDEVP 183


>CR954257-6|CAJ14157.1|  375|Anopheles gambiae RrnaAD, ribosomal RNA
           adenine dimethylaseprotein.
          Length = 375

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
 Frame = +1

Query: 715 WMLSR---HHSLIDHLLPDN 765
           W L R     +L DHLLPDN
Sbjct: 208 WYLVRIVPRRNLFDHLLPDN 227


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 361 ECHLDHLGR 335
           ECHLDH GR
Sbjct: 328 ECHLDHNGR 336


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 829,734
Number of Sequences: 2352
Number of extensions: 16717
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81497388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)