Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0006.Seq
         (765 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein ...    25   1.9  
AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase ...    25   3.4  
AF364132-1|AAL35508.1|  397|Anopheles gambiae putative odorant r...    24   5.9  
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    23   7.8  

>AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein L8
           protein.
          Length = 261

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 368 RCIINEAKGSGLLTVFRTPGKKRSGKKKVTGMD 270
           R I  + KG+G  +VFR   KKR G+ K+  +D
Sbjct: 3   RVIRAQRKGAG--SVFRAHTKKRKGQPKLRHLD 33


>AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase
           protein.
          Length = 849

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 340 EPLASLIMHLTVHTDVFVASEV 405
           EP+A + +H  +HT  +V S V
Sbjct: 722 EPMAEIFIHQAIHTIEYVLSTV 743


>AF364132-1|AAL35508.1|  397|Anopheles gambiae putative odorant
           receptor Or4 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = -1

Query: 636 RLRTVESLPLLTVKLFVIIACGLCCHCYLLSVC 538
           R    + +  + + L V++ CG  C+  ++++C
Sbjct: 180 RTSVEDYITFVLIMLPVVVMCGYVCNLKVMTIC 212


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
            channel alpha1 subunit protein.
          Length = 1893

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -3

Query: 112  RWKKRTENNRKLVNEKSNIRLLRIE 38
            R+KKR EN+ KL ++++  R + ++
Sbjct: 1580 RFKKRKENDSKLNSDQNKRRTMTLQ 1604


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 731,212
Number of Sequences: 2352
Number of extensions: 15857
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79418373
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)