Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_D11
         (645 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    25   2.7  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   2.7  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 11/53 (20%), Positives = 27/53 (50%)
 Frame = +3

Query: 135 ITEEYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKD 293
           + E Y  +  TL ++ +    +ER   +  +++  + +    I Q+++E N+D
Sbjct: 380 LKEAYGTVRRTLQDVQAKQAAIERGMRNASERVTRIQKDARQIEQDLQERNRD 432



 Score = 23.0 bits (47), Expect = 8.3
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
 Frame = +3

Query: 117 DDNNEDITEEYELLESTLDELNSA-------LDFLERKNDDIHQQLKELLQSNIAIRQEM 275
           D+      +  E L+  L+ELNSA       L  + RK     Q +K+L Q  +   Q++
Sbjct: 708 DELKRHTQQRREQLQRELNELNSAYAKEDERLQEMTRKLHQRQQHMKKLQQELLTNEQQL 767

Query: 276 RE 281
           ++
Sbjct: 768 QQ 769


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 126 NEDITEEYELLESTLDELNSALDFLERKNDDIHQQLKEL 242
           NE + +EY   +  L++L + +   E+    + QQ+ EL
Sbjct: 833 NESVADEYAQKKRQLEQLRAGVACSEQTVATLEQQMAEL 871


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,177
Number of Sequences: 2352
Number of extensions: 9090
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63559560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)