Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120070X.Seq
         (534 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    27   0.30 
AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering In...    26   0.69 
AF510719-1|AAP47148.1|  591|Anopheles gambiae ammonium transport...    24   2.8  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    24   3.7  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   8.5  

>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 0.30
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = +3

Query: 36  RQHHPPRRHGGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVP 179
           +QHH    H   P     QQ+ S     P+  K + HD      +L P
Sbjct: 309 QQHH---HHQHQPQQQHQQQYHSHPHHTPVQFKTELHDNTQYDEELSP 353


>AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering
           Institute proto-oncogeneproduct protein.
          Length = 358

 Score = 26.2 bits (55), Expect = 0.69
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 30  LSRQHHPPRRHGGSPSGNRHQQFPSQASTLP 122
           L+ QHH    H G PSG    +  S    LP
Sbjct: 58  LASQHHALSHHAGEPSGGGGGRAGSDEDELP 88


>AF510719-1|AAP47148.1|  591|Anopheles gambiae ammonium
           transport-like protein protein.
          Length = 591

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 99  PSQASTLPISGKFQAHDINNQQSQLVPG 182
           P  AST P  G FQ+   NN  S ++PG
Sbjct: 10  PGAASTTPSPGAFQSLARNN--SYVIPG 35


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +1

Query: 280  AISVTGFNFTHIR*IPSSCKILIPYSSSMAFTSLVDTLANTIHRDAITAPLVETA 444
            ++ +  F   H++    S  I+  YS       L   LAN +HR+A ++  ++ A
Sbjct: 1073 SMPIQAFEMIHLKTYQGS--IIQKYSRLSCILELDTMLANHLHREAFSSSELQKA 1125


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 21  LAWLSRQHHPPRRHGGSPSGNRHQQFPSQASTL 119
           LAW   Q + P+      + + HQQ  +Q   L
Sbjct: 406 LAWFGEQRNRPKDRNQPATLHHHQQVHNQQRIL 438


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 527,712
Number of Sequences: 2352
Number of extensions: 9828
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 49474503
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)