Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120066.Seq
         (806 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-1|CAJ14152.1|  324|Anopheles gambiae putative dodecenoy...    26   1.2  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    25   2.1  
AF063021-4|AAC16248.1|   93|Anopheles gambiae unknown protein.         24   4.8  
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    23   8.4  

>CR954257-1|CAJ14152.1|  324|Anopheles gambiae putative
           dodecenoylCoA deltaisomerase protein.
          Length = 324

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +1

Query: 346 SIPGEPILFTENEGVLLCSVDRPSI---VKMLSREFDTEALVNFEND 477
           S P EPI+  +   + L  ++RP +   +  ++    + A+  FEND
Sbjct: 41  SHPEEPIVVEKENNITLIGINRPKVRNAIDSITGRKLSAAIAEFEND 87


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 127 NSEN*IGAQQIHGYAQHPGNDPAAVGNI*KQSRHSANCRR 246
           NS N   + Q H   QH  + P+AV N    +RH++  RR
Sbjct: 820 NSTNSAYSMQSHQQQQH--HQPSAVSNSNGLARHNSKSRR 857


>AF063021-4|AAC16248.1|   93|Anopheles gambiae unknown protein.
          Length = 93

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 389 CCCAPSTDRL 418
           CCC PS++RL
Sbjct: 67  CCCVPSSERL 76


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
            channel alpha1 subunit protein.
          Length = 1893

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 113  NCLDFLNQIRPIRRFFGSFHRCLQFR 36
            NC++F  + +PIRR+    HR +Q++
Sbjct: 1144 NCIEFALKAKPIRRYIPK-HR-IQYK 1167


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 820,535
Number of Sequences: 2352
Number of extensions: 15626
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 85239615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)