Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060065.seq
         (694 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ302654-1|CAC35519.1|  168|Anopheles gambiae gSG2-like protein ...    27   0.42 
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    25   2.3  
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    23   9.1  
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    23   9.1  

>AJ302654-1|CAC35519.1|  168|Anopheles gambiae gSG2-like protein
           protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 0.42
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 261 EAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 389
           + G Q    S+G+G+    +P + G G  +SG  +FGN  +GG
Sbjct: 121 QGGGQGGIPSFGSGQQNGGVPFL-GNGQGQSGFPSFGNGQQGG 162


>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 369 RRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPPCY 253
           ++HP  +  +HHH H      H  +   QH     P CY
Sbjct: 175 QQHPGHSQHHHHHHH-----HHPHHSQQQH--SASPRCY 206


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -2

Query: 372 YRRHPDRTYEYHHH--GHAEFGRQHVQYPMIQ 283
           +  HP   + +HHH    A+    H Q+ +IQ
Sbjct: 498 HHAHPHHHHHHHHHHPTAADLAGYHHQHNVIQ 529


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 138 DGAGCSQAPPVRVQGAHPSGPG 203
           DG     +PP+ V G+  S PG
Sbjct: 153 DGLHSIPSPPITVSGSDMSSPG 174


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 672,063
Number of Sequences: 2352
Number of extensions: 13925
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70250040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)