Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0032
         (757 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...   198   2e-52
Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein ...   111   2e-26
EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            73   1e-14
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    23   7.7  

>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score =  198 bits (482), Expect = 2e-52
 Identities = 94/176 (53%), Positives = 119/176 (67%), Gaps = 10/176 (5%)
 Frame = +1

Query: 256 MGTTKRLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGHITVDGEDVEMALWD 435
           M + + +K  VVGDG VGKTC+L  YT + FP EYVPT FDNY   + VDG  V + LWD
Sbjct: 1   MSSGRPIKCVVVGDGTVGKTCMLISYTTDSFPGEYVPTSFDNYSAPMVVDGVQVSLGLWD 60

Query: 436 TAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVVHKWYPELKHFSASVPIVLVATKI 615
           TAGQEDY+RLRPLSY QT+ FL+CYSV S SS+ENV  KWYPE+KH     PI+LV TKI
Sbjct: 61  TAGQEDYDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEIKHHCPDAPIILVGTKI 120

Query: 616 DLRSSDKAV----------VTTQEGKKLKKKIRAAHLVECSALERINMDEVFEEAV 753
           DLR   + +          +  ++G+KL  KIRA   +ECSAL +  + +VF+EA+
Sbjct: 121 DLREDRETISLLADQGLSALKREQGQKLANKIRAVKYMECSALTQRGLKQVFDEAL 176


>Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein
           protein.
          Length = 134

 Score =  111 bits (268), Expect = 2e-26
 Identities = 55/116 (47%), Positives = 76/116 (65%), Gaps = 10/116 (8%)
 Frame = +1

Query: 436 TAGQEDYERLRPLSYTQTNCFLVCYSVGSRSSYENVVHKWYPELKHFSASVPIVLVATKI 615
           +AGQEDY+RLRPLSY QT+ FLVC+SV S SS+ENV  KW PE+ H     P +LV T+I
Sbjct: 1   SAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQI 60

Query: 616 DLRSSDKAV----------VTTQEGKKLKKKIRAAHLVECSALERINMDEVFEEAV 753
           DLR  +  +          +T ++G+KL K+++A   VECSAL +  +  VF+ A+
Sbjct: 61  DLRDENSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSALTQKGLKNVFDVAI 116


>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 72.5 bits (170), Expect = 1e-14
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 2/159 (1%)
 Frame = +1

Query: 271 RLKITVVGDGMVGKTCLLYVYTRNEFPEEYVPTVFDNYVGH-ITVDGEDVEMALWDTAGQ 447
           + K+ ++G+  VGK+ L+  + + +F E    T+   ++   + +D   V+  +WDTAGQ
Sbjct: 24  QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCIDDTTVKFEIWDTAGQ 83

Query: 448 EDYERLRPLSYTQTNCFLVCYSVGSRSSYENVVHKWYPEL-KHFSASVPIVLVATKIDLR 624
           E Y  L P+ Y      +V Y + +  S+      W  EL +  S ++ I L   K DL 
Sbjct: 84  ERYHSLAPMYYRGAQAAIVVYDIQNSDSFAR-AKTWVKELQRQASPNIVIALAGNKADLA 142

Query: 625 SSDKAVVTTQEGKKLKKKIRAAHLVECSALERINMDEVF 741
           +S   VV  +E K+     R    +E SA   +N++++F
Sbjct: 143 NS--RVVDYEEAKQYADDNRLL-FMETSAKTAVNVNDIF 178


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 282 NCCWRWYGWQDLLAICI 332
           +CCW W  +Q+ +A  +
Sbjct: 789 DCCWVWLKFQEWVAFIV 805


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 815,481
Number of Sequences: 2352
Number of extensions: 16261
Number of successful extensions: 244
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78170964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)