Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00008
         (421 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC049850-1|AAH49850.1|  800|Homo sapiens nucleolar complex assoc...    33   0.29 
AL355341-1|CAD13194.1|  800|Homo sapiens AD24 protein protein.         33   0.29 
AB077992-1|BAB84194.1|  800|Homo sapiens AD24 protein.                 33   0.29 
BC002465-1|AAH02465.1|   65|Homo sapiens Unknown (protein for IM...    31   2.1  

>BC049850-1|AAH49850.1|  800|Homo sapiens nucleolar complex
           associated 3 homolog (S. cerevisiae) protein.
          Length = 800

 Score = 33.5 bits (73), Expect = 0.29
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +1

Query: 268 SVRKLATLSAYEVFKDILPEYQIR--HQDYSNVKLKKDT 378
           +VRKL  +S  E+FKDI P Y+IR   +   + K +K+T
Sbjct: 253 TVRKLVIVSLMELFKDITPSYKIRPLTEAEKSTKTRKET 291


>AL355341-1|CAD13194.1|  800|Homo sapiens AD24 protein protein.
          Length = 800

 Score = 33.5 bits (73), Expect = 0.29
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +1

Query: 268 SVRKLATLSAYEVFKDILPEYQIR--HQDYSNVKLKKDT 378
           +VRKL  +S  E+FKDI P Y+IR   +   + K +K+T
Sbjct: 253 TVRKLVIVSLMELFKDITPSYKIRPLTEAEKSTKTRKET 291


>AB077992-1|BAB84194.1|  800|Homo sapiens AD24 protein.
          Length = 800

 Score = 33.5 bits (73), Expect = 0.29
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +1

Query: 268 SVRKLATLSAYEVFKDILPEYQIR--HQDYSNVKLKKDT 378
           +VRKL  +S  E+FKDI P Y+IR   +   + K +K+T
Sbjct: 253 TVRKLVIVSLMELFKDITPSYKIRPLTEAEKSTKTRKET 291


>BC002465-1|AAH02465.1|   65|Homo sapiens Unknown (protein for
           IMAGE:3344506) protein.
          Length = 65

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 116 VARKEKLNNDKLRIGALCSSLLESP 190
           VAR+EK  ND  ++G LC+ + ESP
Sbjct: 7   VARQEKERNDVRKVGKLCTVIPESP 31


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,226,471
Number of Sequences: 237096
Number of extensions: 1052560
Number of successful extensions: 2428
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2428
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3202085264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)