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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00005
         (439 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC011826-1|AAH11826.1|  540|Homo sapiens CCR4-NOT transcription ...    39   0.009
BC002597-1|AAH02597.1|  540|Homo sapiens CCR4-NOT transcription ...    39   0.009
AF180473-1|AAF29827.1|  540|Homo sapiens Not2p protein.                39   0.009
AF044215-1|AAQ13426.1|  378|Homo sapiens unknown protein.              39   0.009
AY739714-1|AAW65983.1| 1224|Homo sapiens HECTD1 protein.               31   1.3  
AY254380-1|AAP13073.1| 2612|Homo sapiens E3 ligase for inhibin r...    31   1.3  
AB032957-1|BAA86445.2| 2168|Homo sapiens KIAA1131 protein protein.     31   1.3  
AL358780-2|CAI13978.2|  818|Homo sapiens novel protein (FLJ16611...    29   7.0  
AK131456-1|BAD18601.1|  762|Homo sapiens protein ( Homo sapiens ...    29   7.0  
AB234866-1|BAE93016.1|  827|Homo sapiens DLN-1 protein.                29   7.0  

>BC011826-1|AAH11826.1|  540|Homo sapiens CCR4-NOT transcription
           complex, subunit 2 protein.
          Length = 540

 Score = 38.7 bits (86), Expect = 0.009
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
 Frame = +3

Query: 15  MSNLSRFNAGNNYHSVFGEGGDTSTPPL-LDLSEFPSLTAR----GAGDQXXXXXXXXXG 179
           M+    F   N+  S    G D S     LDLS+FP+L  R    G+G+          G
Sbjct: 196 MNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLA-G 254

Query: 180 SKPYVGMVKQPTSEQS-EFTMSSE 248
             PYVGMV +P +EQS +F++ +E
Sbjct: 255 RAPYVGMVTKPANEQSQDFSIHNE 278


>BC002597-1|AAH02597.1|  540|Homo sapiens CCR4-NOT transcription
           complex, subunit 2 protein.
          Length = 540

 Score = 38.7 bits (86), Expect = 0.009
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
 Frame = +3

Query: 15  MSNLSRFNAGNNYHSVFGEGGDTSTPPL-LDLSEFPSLTAR----GAGDQXXXXXXXXXG 179
           M+    F   N+  S    G D S     LDLS+FP+L  R    G+G+          G
Sbjct: 196 MNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLA-G 254

Query: 180 SKPYVGMVKQPTSEQS-EFTMSSE 248
             PYVGMV +P +EQS +F++ +E
Sbjct: 255 RAPYVGMVTKPANEQSQDFSIHNE 278


>AF180473-1|AAF29827.1|  540|Homo sapiens Not2p protein.
          Length = 540

 Score = 38.7 bits (86), Expect = 0.009
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
 Frame = +3

Query: 15  MSNLSRFNAGNNYHSVFGEGGDTSTPPL-LDLSEFPSLTAR----GAGDQXXXXXXXXXG 179
           M+    F   N+  S    G D S     LDLS+FP+L  R    G+G+          G
Sbjct: 196 MNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLA-G 254

Query: 180 SKPYVGMVKQPTSEQS-EFTMSSE 248
             PYVGMV +P +EQS +F++ +E
Sbjct: 255 RAPYVGMVTKPANEQSQDFSIHNE 278


>AF044215-1|AAQ13426.1|  378|Homo sapiens unknown protein.
          Length = 378

 Score = 38.7 bits (86), Expect = 0.009
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
 Frame = +3

Query: 15  MSNLSRFNAGNNYHSVFGEGGDTSTPPL-LDLSEFPSLTAR----GAGDQXXXXXXXXXG 179
           M+    F   N+  S    G D S     LDLS+FP+L  R    G+G+          G
Sbjct: 197 MNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLA-G 255

Query: 180 SKPYVGMVKQPTSEQS-EFTMSSE 248
             PYVGMV +P +EQS +F++ +E
Sbjct: 256 RAPYVGMVTKPANEQSQDFSIHNE 279


>AY739714-1|AAW65983.1| 1224|Homo sapiens HECTD1 protein.
          Length = 1224

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 21  NLSRFNAGNNYHSVFGEGGDTSTPPLLDLSEFPSLTARG 137
           NLSR ++ NN +++      T+T PL+    FP+LT  G
Sbjct: 180 NLSRSSSDNNTNTLGRNVMSTATSPLMGAQSFPNLTTPG 218


>AY254380-1|AAP13073.1| 2612|Homo sapiens E3 ligase for inhibin
            receptor protein.
          Length = 2612

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 21   NLSRFNAGNNYHSVFGEGGDTSTPPLLDLSEFPSLTARG 137
            NLSR ++ NN +++      T+T PL+    FP+LT  G
Sbjct: 1567 NLSRSSSDNNTNTLGRNVMSTATSPLMGAQSFPNLTTPG 1605


>AB032957-1|BAA86445.2| 2168|Homo sapiens KIAA1131 protein protein.
          Length = 2168

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 21   NLSRFNAGNNYHSVFGEGGDTSTPPLLDLSEFPSLTARG 137
            NLSR ++ NN +++      T+T PL+    FP+LT  G
Sbjct: 1123 NLSRSSSDNNTNTLGRNVMSTATSPLMGAQSFPNLTTPG 1161


>AL358780-2|CAI13978.2|  818|Homo sapiens novel protein (FLJ16611)
           protein.
          Length = 818

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 82  HQHHHFWT*ANFHH*QQEARVTKHPLQHH 168
           H HHH     + HH  Q  + + HP  HH
Sbjct: 248 HHHHHHHHHHHHHHRAQPPQQSHHPPHHH 276


>AK131456-1|BAD18601.1|  762|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16611 fis, clone TESTI4011829. ).
          Length = 762

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 82  HQHHHFWT*ANFHH*QQEARVTKHPLQHH 168
           H HHH     + HH  Q  + + HP  HH
Sbjct: 248 HHHHHHHHHHHHHHRAQPPQQSHHPPHHH 276


>AB234866-1|BAE93016.1|  827|Homo sapiens DLN-1 protein.
          Length = 827

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 82  HQHHHFWT*ANFHH*QQEARVTKHPLQHH 168
           H HHH     + HH  Q  + + HP  HH
Sbjct: 257 HHHHHHHHHHHHHHRAQPPQQSHHPPHHH 285


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,568,438
Number of Sequences: 237096
Number of extensions: 871569
Number of successful extensions: 1810
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1805
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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