SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0027
         (691 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U78525-1|AAC99479.1|  814|Homo sapiens eukaryotic translation in...   112   1e-24
U62583-1|AAB42010.1|  873|Homo sapiens Prt1 homolog protein.          112   1e-24
BC110865-1|AAI10866.1|  814|Homo sapiens eukaryotic translation ...   112   1e-24
BC009986-1|AAH09986.1|  622|Homo sapiens Unknown (protein for IM...   112   1e-24
BC001173-1|AAH01173.1|  814|Homo sapiens EIF3S9 protein protein.      112   1e-24
AK126670-1|BAC86636.1|  152|Homo sapiens protein ( Homo sapiens ...    86   1e-16
BC011885-1|AAH11885.1|  585|Homo sapiens eukaryotic translation ...    52   2e-06
AK027356-1|BAB55058.1|  585|Homo sapiens protein ( Homo sapiens ...    52   2e-06
AF497978-1|AAM83402.1|  585|Homo sapiens eukaryotic translation ...    52   2e-06
AF212241-1|AAK14926.1|  609|Homo sapiens CDA02 protein.                52   2e-06
AF109358-1|AAQ13506.1|  317|Homo sapiens MSTP004 protein.              52   2e-06
AB209381-1|BAD92618.1|  170|Homo sapiens eukaryotic translation ...    33   0.96 
AM082580-1|CAL06726.1|  100|Homo sapiens immunoglobulin heavy ch...    32   1.7  
U20980-1|AAA76737.1|  559|Homo sapiens chromatin assembly factor...    31   3.9  
BC021218-1|AAH21218.1|  559|Homo sapiens chromatin assembly fact...    31   3.9  
AP001725-3|BAA95549.1|  559|Homo sapiens chromatin assembly fact...    31   3.9  
AP000694-1|BAA89426.1|  559|Homo sapiens chromatin assembly fact...    31   3.9  
BC035024-1|AAH35024.1|  520|Homo sapiens chromosome 16 open read...    31   5.1  
AF447587-1|AAM22870.1|  520|Homo sapiens unknown protein.              31   5.1  
AM081742-1|CAL05888.1|  100|Homo sapiens immunoglobulin heavy ch...    30   6.8  
AM079085-1|CAL03231.1|  101|Homo sapiens immunoglobulin heavy ch...    30   8.9  
AF103198-1|AAD30758.1|  129|Homo sapiens immunoglobulin heavy ch...    30   8.9  

>U78525-1|AAC99479.1|  814|Homo sapiens eukaryotic translation
           initiation factor protein.
          Length = 814

 Score =  112 bits (270), Expect = 1e-24
 Identities = 46/84 (54%), Positives = 63/84 (75%)
 Frame = +2

Query: 2   ERKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYV 181
           +++  N +FWSP GQF+VLA L    GAL F+DT+D T+MN+A+HY  S +EWDPTGRYV
Sbjct: 607 DKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYV 666

Query: 182 VTGVSSXKCKMDCGYYIWSFQGKI 253
           VT VS    K+D  Y++W+FQG++
Sbjct: 667 VTSVSWWSHKVDNAYWLWTFQGRL 690



 Score = 70.5 bits (165), Expect = 5e-12
 Identities = 37/83 (44%), Positives = 45/83 (54%)
 Frame = +1

Query: 268 KEGFAQFHWRPRPPTLLSXXXXXXXXXXXXXYYSQFESKDRMRSSKASKELVAKRTEQMK 447
           K+ F Q  WRPRPPTLLS             Y   FE KDR+  SKASKELV +R   M+
Sbjct: 696 KDRFCQLLWRPRPPTLLSQEQIKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMME 755

Query: 448 KFTEYRESKIQEWNEQKPRRPNL 516
            F +YR+   + + EQK  R  L
Sbjct: 756 DFRKYRKMAQELYMEQKNERLEL 778


>U62583-1|AAB42010.1|  873|Homo sapiens Prt1 homolog protein.
          Length = 873

 Score =  112 bits (270), Expect = 1e-24
 Identities = 46/84 (54%), Positives = 63/84 (75%)
 Frame = +2

Query: 2   ERKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYV 181
           +++  N +FWSP GQF+VLA L    GAL F+DT+D T+MN+A+HY  S +EWDPTGRYV
Sbjct: 607 DKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYV 666

Query: 182 VTGVSSXKCKMDCGYYIWSFQGKI 253
           VT VS    K+D  Y++W+FQG++
Sbjct: 667 VTSVSWWSHKVDNAYWLWTFQGRL 690



 Score = 70.5 bits (165), Expect = 5e-12
 Identities = 37/83 (44%), Positives = 45/83 (54%)
 Frame = +1

Query: 268 KEGFAQFHWRPRPPTLLSXXXXXXXXXXXXXYYSQFESKDRMRSSKASKELVAKRTEQMK 447
           K+ F Q  WRPRPPTLLS             Y   FE KDR+  SKASKELV +R   M+
Sbjct: 696 KDRFCQLLWRPRPPTLLSQEQIKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMME 755

Query: 448 KFTEYRESKIQEWNEQKPRRPNL 516
            F +YR+   + + EQK  R  L
Sbjct: 756 DFRKYRKMAQELYMEQKNERLEL 778


>BC110865-1|AAI10866.1|  814|Homo sapiens eukaryotic translation
           initiation factor 3, subunit B protein.
          Length = 814

 Score =  112 bits (270), Expect = 1e-24
 Identities = 46/84 (54%), Positives = 63/84 (75%)
 Frame = +2

Query: 2   ERKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYV 181
           +++  N +FWSP GQF+VLA L    GAL F+DT+D T+MN+A+HY  S +EWDPTGRYV
Sbjct: 607 DKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYV 666

Query: 182 VTGVSSXKCKMDCGYYIWSFQGKI 253
           VT VS    K+D  Y++W+FQG++
Sbjct: 667 VTSVSWWSHKVDNAYWLWTFQGRL 690



 Score = 70.5 bits (165), Expect = 5e-12
 Identities = 37/83 (44%), Positives = 45/83 (54%)
 Frame = +1

Query: 268 KEGFAQFHWRPRPPTLLSXXXXXXXXXXXXXYYSQFESKDRMRSSKASKELVAKRTEQMK 447
           K+ F Q  WRPRPPTLLS             Y   FE KDR+  SKASKELV +R   M+
Sbjct: 696 KDRFCQLLWRPRPPTLLSQEQIKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMME 755

Query: 448 KFTEYRESKIQEWNEQKPRRPNL 516
            F +YR+   + + EQK  R  L
Sbjct: 756 DFRKYRKMAQELYMEQKNERLEL 778


>BC009986-1|AAH09986.1|  622|Homo sapiens Unknown (protein for
           IMAGE:4124553) protein.
          Length = 622

 Score =  112 bits (270), Expect = 1e-24
 Identities = 46/84 (54%), Positives = 63/84 (75%)
 Frame = +2

Query: 2   ERKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYV 181
           +++  N +FWSP GQF+VLA L    GAL F+DT+D T+MN+A+HY  S +EWDPTGRYV
Sbjct: 415 DKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYV 474

Query: 182 VTGVSSXKCKMDCGYYIWSFQGKI 253
           VT VS    K+D  Y++W+FQG++
Sbjct: 475 VTSVSWWSHKVDNAYWLWTFQGRL 498



 Score = 70.5 bits (165), Expect = 5e-12
 Identities = 37/83 (44%), Positives = 45/83 (54%)
 Frame = +1

Query: 268 KEGFAQFHWRPRPPTLLSXXXXXXXXXXXXXYYSQFESKDRMRSSKASKELVAKRTEQMK 447
           K+ F Q  WRPRPPTLLS             Y   FE KDR+  SKASKELV +R   M+
Sbjct: 504 KDRFCQLLWRPRPPTLLSQEQIKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMME 563

Query: 448 KFTEYRESKIQEWNEQKPRRPNL 516
            F +YR+   + + EQK  R  L
Sbjct: 564 DFRKYRKMAQELYMEQKNERLEL 586


>BC001173-1|AAH01173.1|  814|Homo sapiens EIF3S9 protein protein.
          Length = 814

 Score =  112 bits (270), Expect = 1e-24
 Identities = 46/84 (54%), Positives = 63/84 (75%)
 Frame = +2

Query: 2   ERKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYV 181
           +++  N +FWSP GQF+VLA L    GAL F+DT+D T+MN+A+HY  S +EWDPTGRYV
Sbjct: 607 DKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYV 666

Query: 182 VTGVSSXKCKMDCGYYIWSFQGKI 253
           VT VS    K+D  Y++W+FQG++
Sbjct: 667 VTSVSWWSHKVDNAYWLWTFQGRL 690



 Score = 70.5 bits (165), Expect = 5e-12
 Identities = 37/83 (44%), Positives = 45/83 (54%)
 Frame = +1

Query: 268 KEGFAQFHWRPRPPTLLSXXXXXXXXXXXXXYYSQFESKDRMRSSKASKELVAKRTEQMK 447
           K+ F Q  WRPRPPTLLS             Y   FE KDR+  SKASKELV +R   M+
Sbjct: 696 KDRFCQLLWRPRPPTLLSQEQIKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMME 755

Query: 448 KFTEYRESKIQEWNEQKPRRPNL 516
            F +YR+   + + EQK  R  L
Sbjct: 756 DFRKYRKMAQELYMEQKNERLEL 778


>AK126670-1|BAC86636.1|  152|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44714 fis, clone BRACE3020669, highly  similar
           to Eukaryotic translation initiation factor 3 subunit 9.
           ).
          Length = 152

 Score = 85.8 bits (203), Expect = 1e-16
 Identities = 34/58 (58%), Positives = 46/58 (79%)
 Frame = +2

Query: 80  GALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVTGVSSXKCKMDCGYYIWSFQGKI 253
           GAL F+DT+D T+MN+A+HY  S +EWDPTGRYVVT VS    K+D  Y++W+FQG++
Sbjct: 30  GALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRL 87



 Score = 48.8 bits (111), Expect = 2e-05
 Identities = 24/49 (48%), Positives = 26/49 (53%)
 Frame = +1

Query: 268 KEGFAQFHWRPRPPTLLSXXXXXXXXXXXXXYYSQFESKDRMRSSKASK 414
           K+ F Q  WRPRPPTLLS             Y   FE KDR+  SKASK
Sbjct: 93  KDRFCQLLWRPRPPTLLSQEQIKQIKKDLKKYSKIFEQKDRLSQSKASK 141


>BC011885-1|AAH11885.1|  585|Homo sapiens eukaryotic translation
           initiation factor 2A, 65kDa protein.
          Length = 585

 Score = 52.0 bits (119), Expect = 2e-06
 Identities = 22/81 (27%), Positives = 41/81 (50%)
 Frame = +2

Query: 11  PFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVTG 190
           P N  ++SP G  +VLA  G   G +E  D  ++ +++       +   W P G +++T 
Sbjct: 316 PRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTA 375

Query: 191 VSSXKCKMDCGYYIWSFQGKI 253
             + + +++ GY IW + G I
Sbjct: 376 TCAPRLRVNNGYKIWHYTGSI 396


>AK027356-1|BAB55058.1|  585|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14450 fis, clone HEMBB1001736, weakly similar to
           EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 9. ).
          Length = 585

 Score = 52.0 bits (119), Expect = 2e-06
 Identities = 22/81 (27%), Positives = 41/81 (50%)
 Frame = +2

Query: 11  PFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVTG 190
           P N  ++SP G  +VLA  G   G +E  D  ++ +++       +   W P G +++T 
Sbjct: 316 PRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTA 375

Query: 191 VSSXKCKMDCGYYIWSFQGKI 253
             + + +++ GY IW + G I
Sbjct: 376 TCAPRLRVNNGYKIWHYTGSI 396


>AF497978-1|AAM83402.1|  585|Homo sapiens eukaryotic translation
           initiation factor 2A protein.
          Length = 585

 Score = 52.0 bits (119), Expect = 2e-06
 Identities = 22/81 (27%), Positives = 41/81 (50%)
 Frame = +2

Query: 11  PFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVTG 190
           P N  ++SP G  +VLA  G   G +E  D  ++ +++       +   W P G +++T 
Sbjct: 316 PRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTA 375

Query: 191 VSSXKCKMDCGYYIWSFQGKI 253
             + + +++ GY IW + G I
Sbjct: 376 TCAPRLRVNNGYKIWHYTGSI 396


>AF212241-1|AAK14926.1|  609|Homo sapiens CDA02 protein.
          Length = 609

 Score = 52.0 bits (119), Expect = 2e-06
 Identities = 22/81 (27%), Positives = 41/81 (50%)
 Frame = +2

Query: 11  PFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVTG 190
           P N  ++SP G  +VLA  G   G +E  D  ++ +++       +   W P G +++T 
Sbjct: 340 PRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTA 399

Query: 191 VSSXKCKMDCGYYIWSFQGKI 253
             + + +++ GY IW + G I
Sbjct: 400 TCAPRLRVNNGYKIWHYTGSI 420


>AF109358-1|AAQ13506.1|  317|Homo sapiens MSTP004 protein.
          Length = 317

 Score = 52.0 bits (119), Expect = 2e-06
 Identities = 22/81 (27%), Positives = 41/81 (50%)
 Frame = +2

Query: 11  PFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVTG 190
           P N  ++SP G  +VLA  G   G +E  D  ++ +++       +   W P G +++T 
Sbjct: 102 PRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTA 161

Query: 191 VSSXKCKMDCGYYIWSFQGKI 253
             + + +++ GY IW + G I
Sbjct: 162 TCAPRLRVNNGYKIWHYTGSI 182


>AB209381-1|BAD92618.1|  170|Homo sapiens eukaryotic translation
           initiation factor 3, subunit 9 eta, 116kDa isoform b var
           protein.
          Length = 170

 Score = 33.1 bits (72), Expect = 0.96
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +2

Query: 2   ERKPFNHLFWSPSGQFIVLANL 67
           +++  N +FWSP GQF+VLA L
Sbjct: 147 DKQQANTIFWSPQGQFVVLAGL 168


>AM082580-1|CAL06726.1|  100|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 100

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = +3

Query: 207 VKWIAAITSGHSRARYQESDEGRF 278
           ++W+AAI+ G SR+ Y ES +GRF
Sbjct: 48  LEWVAAISGGGSRSFYAESVKGRF 71


>U20980-1|AAA76737.1|  559|Homo sapiens chromatin assembly factor-I
           p60 subunit protein.
          Length = 559

 Score = 31.1 bits (67), Expect = 3.9
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 29  WSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVT 187
           W+  G  +  A++  T    +       +I N    Y + G+ WDP G+YV T
Sbjct: 137 WATDGNLMASASVDNTAIIWDVSKGQKISIFNEHKSY-VQGVTWDPLGQYVAT 188


>BC021218-1|AAH21218.1|  559|Homo sapiens chromatin assembly factor
           1, subunit B (p60) protein.
          Length = 559

 Score = 31.1 bits (67), Expect = 3.9
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 29  WSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVT 187
           W+  G  +  A++  T    +       +I N    Y + G+ WDP G+YV T
Sbjct: 137 WATDGNLMASASVDNTAIIWDVSKGQKISIFNEHKSY-VQGVTWDPLGQYVAT 188


>AP001725-3|BAA95549.1|  559|Homo sapiens chromatin assembly
           factor-I p60 subunit protein.
          Length = 559

 Score = 31.1 bits (67), Expect = 3.9
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 29  WSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVT 187
           W+  G  +  A++  T    +       +I N    Y + G+ WDP G+YV T
Sbjct: 137 WATDGNLMASASVDNTAIIWDVSKGQKISIFNEHKSY-VQGVTWDPLGQYVAT 188


>AP000694-1|BAA89426.1|  559|Homo sapiens chromatin assembly factor
           1, subunit B (p60) protein.
          Length = 559

 Score = 31.1 bits (67), Expect = 3.9
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 29  WSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVT 187
           W+  G  +  A++  T    +       +I N    Y + G+ WDP G+YV T
Sbjct: 137 WATDGNLMASASVDNTAIIWDVSKGQKISIFNEHKSY-VQGVTWDPLGQYVAT 188


>BC035024-1|AAH35024.1|  520|Homo sapiens chromosome 16 open reading
           frame 71 protein.
          Length = 520

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 108 SFVSKNSNAPPVSPRLARTMNCPDGDQK 25
           SF +K S  PP  P+   T++C +GD K
Sbjct: 155 SFNTKGSQGPPWDPQAEATLSCHEGDPK 182


>AF447587-1|AAM22870.1|  520|Homo sapiens unknown protein.
          Length = 520

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 108 SFVSKNSNAPPVSPRLARTMNCPDGDQK 25
           SF +K S  PP  P+   T++C +GD K
Sbjct: 155 SFNTKGSQGPPWDPQAEATLSCHEGDPK 182


>AM081742-1|CAL05888.1|  100|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 100

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 207 VKWIAAITSGHSRARYQESDEGRFR 281
           ++W++AI++G   A Y +S +GRFR
Sbjct: 48  LEWVSAISAGGGNAYYADSVKGRFR 72


>AM079085-1|CAL03231.1|  101|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 101

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 207 VKWIAAITSGHSRARYQESDEGRF 278
           ++W++AI+ G SR  Y +S +GRF
Sbjct: 48  LEWVSAISGGGSRTYYADSVKGRF 71


>AF103198-1|AAD30758.1|  129|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 129

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 207 VKWIAAITSGHSRARYQESDEGRF 278
           ++W++ IT+GH    Y +S  GRF
Sbjct: 37  LEWVSTITAGHGDTSYADSVRGRF 60


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,548,242
Number of Sequences: 237096
Number of extensions: 1912315
Number of successful extensions: 15291
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 15048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15291
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -