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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C04f
         (349 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL833922-1|CAD38778.1|  410|Homo sapiens hypothetical protein pr...    34   0.14 
AK223410-1|BAD97130.1|  466|Homo sapiens PAP associated domain c...    34   0.14 
AF089897-1|AAD45199.1|  379|Homo sapiens topoisomerase-related f...    34   0.14 
BC126106-1|AAI26107.1|  542|Homo sapiens polymerase (DNA directe...    33   0.25 
BC117137-1|AAI17138.1|  542|Homo sapiens polymerase (DNA directe...    33   0.25 
BC084567-1|AAH84567.2|  542|Homo sapiens polymerase (DNA directe...    33   0.25 
AY623114-1|AAT38110.1|  542|Homo sapiens polymerase (DNA directe...    33   0.25 
AF089896-1|AAD45198.1|  517|Homo sapiens topoisomerase-related f...    33   0.25 
AB005754-1|BAA24434.2|  542|Homo sapiens LAK-1 protein.                33   0.25 
BC089405-1|AAH89405.1|  390|Homo sapiens PAPD5 protein protein.        32   0.43 
BC008368-1|AAH08368.1|  706|Homo sapiens chromosome 12 open read...    29   5.3  
BC003081-1|AAH03081.1|  706|Homo sapiens chromosome 12 open read...    29   5.3  
AK001499-1|BAA91725.1|  706|Homo sapiens protein ( Homo sapiens ...    29   5.3  
AK001492-1|BAA91721.1|  706|Homo sapiens protein ( Homo sapiens ...    29   5.3  
AK001222-1|BAA91565.1|  294|Homo sapiens protein ( Homo sapiens ...    29   5.3  
BC112165-1|AAI12166.1| 1444|Homo sapiens Cdc42 GTPase-activating...    28   9.3  
BC112163-1|AAI12164.1| 1444|Homo sapiens Cdc42 GTPase-activating...    28   9.3  
AB033030-1|BAA86518.1| 1445|Homo sapiens KIAA1204 protein protein.     28   9.3  

>AL833922-1|CAD38778.1|  410|Homo sapiens hypothetical protein
           protein.
          Length = 410

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = -2

Query: 180 SYFAAQVDISFNMSSGVKSAELIKHF 103
           S+   +VDISFN+ +GV++A+LIK F
Sbjct: 63  SFTEVKVDISFNVQNGVRAADLIKDF 88


>AK223410-1|BAD97130.1|  466|Homo sapiens PAP associated domain
           containing protein 5 variant protein.
          Length = 466

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = -2

Query: 180 SYFAAQVDISFNMSSGVKSAELIKHF 103
           S+   +VDISFN+ +GV++A+LIK F
Sbjct: 72  SFTEVKVDISFNVQNGVRAADLIKDF 97


>AF089897-1|AAD45199.1|  379|Homo sapiens topoisomerase-related
           function protein protein.
          Length = 379

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = -2

Query: 180 SYFAAQVDISFNMSSGVKSAELIKHF 103
           S+   +VDISFN+ +GV++A+LIK F
Sbjct: 19  SFTEVKVDISFNVQNGVRAADLIKDF 44


>BC126106-1|AAI26107.1|  542|Homo sapiens polymerase (DNA directed)
           sigma protein.
          Length = 542

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 13/21 (61%), Positives = 19/21 (90%)
 Frame = -2

Query: 165 QVDISFNMSSGVKSAELIKHF 103
           +VDISFNM +GV++AE IK++
Sbjct: 100 KVDISFNMETGVRAAEFIKNY 120


>BC117137-1|AAI17138.1|  542|Homo sapiens polymerase (DNA directed)
           sigma protein.
          Length = 542

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 13/21 (61%), Positives = 19/21 (90%)
 Frame = -2

Query: 165 QVDISFNMSSGVKSAELIKHF 103
           +VDISFNM +GV++AE IK++
Sbjct: 100 KVDISFNMETGVRAAEFIKNY 120


>BC084567-1|AAH84567.2|  542|Homo sapiens polymerase (DNA directed)
           sigma protein.
          Length = 542

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 13/21 (61%), Positives = 19/21 (90%)
 Frame = -2

Query: 165 QVDISFNMSSGVKSAELIKHF 103
           +VDISFNM +GV++AE IK++
Sbjct: 100 KVDISFNMETGVRAAEFIKNY 120


>AY623114-1|AAT38110.1|  542|Homo sapiens polymerase (DNA directed)
           sigma protein.
          Length = 542

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 13/21 (61%), Positives = 19/21 (90%)
 Frame = -2

Query: 165 QVDISFNMSSGVKSAELIKHF 103
           +VDISFNM +GV++AE IK++
Sbjct: 100 KVDISFNMETGVRAAEFIKNY 120


>AF089896-1|AAD45198.1|  517|Homo sapiens topoisomerase-related
           function protein protein.
          Length = 517

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 13/21 (61%), Positives = 19/21 (90%)
 Frame = -2

Query: 165 QVDISFNMSSGVKSAELIKHF 103
           +VDISFNM +GV++AE IK++
Sbjct: 140 KVDISFNMETGVRAAEFIKNY 160


>AB005754-1|BAA24434.2|  542|Homo sapiens LAK-1 protein.
          Length = 542

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 13/21 (61%), Positives = 19/21 (90%)
 Frame = -2

Query: 165 QVDISFNMSSGVKSAELIKHF 103
           +VDISFNM +GV++AE IK++
Sbjct: 100 KVDISFNMETGVRAAEFIKNY 120


>BC089405-1|AAH89405.1|  390|Homo sapiens PAPD5 protein protein.
          Length = 390

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 13/21 (61%), Positives = 19/21 (90%)
 Frame = -2

Query: 165 QVDISFNMSSGVKSAELIKHF 103
           +VDISFN+ +GV++A+LIK F
Sbjct: 1   KVDISFNVQNGVRAADLIKDF 21


>BC008368-1|AAH08368.1|  706|Homo sapiens chromosome 12 open reading
           frame 11 protein.
          Length = 706

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 19  QWNRTQGPVKVQVAWD*RSRVTSPRAHLEMFDKFGALHAAAHVERYVHLRSE 174
           Q  +++GPV +   W  R    + R H E   +  +++  A  E Y HL+ E
Sbjct: 643 QVEKSKGPVSLLSLWSNRINTANSRKHQEFAGRLNSVNNRA--ELYQHLKEE 692


>BC003081-1|AAH03081.1|  706|Homo sapiens chromosome 12 open reading
           frame 11 protein.
          Length = 706

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 19  QWNRTQGPVKVQVAWD*RSRVTSPRAHLEMFDKFGALHAAAHVERYVHLRSE 174
           Q  +++GPV +   W  R    + R H E   +  +++  A  E Y HL+ E
Sbjct: 643 QVEKSKGPVSLLSLWSNRINTANSRKHQEFAGRLNSVNNRA--ELYQHLKEE 692


>AK001499-1|BAA91725.1|  706|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10637 fis, clone NT2RP2005683. ).
          Length = 706

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 19  QWNRTQGPVKVQVAWD*RSRVTSPRAHLEMFDKFGALHAAAHVERYVHLRSE 174
           Q  +++GPV +   W  R    + R H E   +  +++  A  E Y HL+ E
Sbjct: 643 QVEKSKGPVSLLSLWSNRINTANSRKHQEFAGRLNSVNNRA--ELYQHLKEE 692


>AK001492-1|BAA91721.1|  706|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10630 fis, clone NT2RP2005622. ).
          Length = 706

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 19  QWNRTQGPVKVQVAWD*RSRVTSPRAHLEMFDKFGALHAAAHVERYVHLRSE 174
           Q  +++GPV +   W  R    + R H E   +  +++  A  E Y HL+ E
Sbjct: 643 QVEKSKGPVSLLSLWSNRINTANSRKHQEFAGRLNSVNNRA--ELYQHLKEE 692


>AK001222-1|BAA91565.1|  294|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10360 fis, clone NT2RM2001247. ).
          Length = 294

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 19  QWNRTQGPVKVQVAWD*RSRVTSPRAHLEMFDKFGALHAAAHVERYVHLRSE 174
           Q  +++GPV +   W  R    + R H E   +  +++  A  E Y HL+ E
Sbjct: 231 QVEKSKGPVSLLSLWSNRINTANSRKHQEFAGRLNSVNNRA--ELYQHLKEE 280


>BC112165-1|AAI12166.1| 1444|Homo sapiens Cdc42 GTPase-activating
           protein protein.
          Length = 1444

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +3

Query: 264 DLCPD--PEAYIQYIHVIKLLCKFHLNYL 344
           D CPD   E Y+Q IH +  LCK +   L
Sbjct: 74  DQCPDLTREVYLQDIHCVGSLCKLYFREL 102


>BC112163-1|AAI12164.1| 1444|Homo sapiens Cdc42 GTPase-activating
           protein protein.
          Length = 1444

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +3

Query: 264 DLCPD--PEAYIQYIHVIKLLCKFHLNYL 344
           D CPD   E Y+Q IH +  LCK +   L
Sbjct: 74  DQCPDLTREVYLQDIHCVGSLCKLYFREL 102


>AB033030-1|BAA86518.1| 1445|Homo sapiens KIAA1204 protein protein.
          Length = 1445

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +3

Query: 264 DLCPD--PEAYIQYIHVIKLLCKFHLNYL 344
           D CPD   E Y+Q IH +  LCK +   L
Sbjct: 75  DQCPDLTREVYLQDIHCVGSLCKLYFREL 103


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,690,268
Number of Sequences: 237096
Number of extensions: 944264
Number of successful extensions: 1298
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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