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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0067.Seq
         (568 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.        30   4.9  
AF490258-1|AAO85466.1|  667|Homo sapiens XTP9 protein.                 30   4.9  
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su...    30   4.9  
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro...    30   4.9  
AB016088-1|BAA83714.1|  956|Homo sapiens RNA binding protein pro...    30   4.9  
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro...    30   4.9  
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.     30   4.9  
AB046765-1|BAB13371.2|  968|Homo sapiens KIAA1545 protein protein.     30   6.5  

>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
          Length = 1022

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 21/83 (25%), Positives = 35/83 (42%)
 Frame = -1

Query: 262 AERRNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWV 83
           A R   R     + ++  R  T+ +  +  P    R + R    ++  T S     SR  
Sbjct: 579 ARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 638

Query: 82  NPA*RSRIIQNRIPTRKSRNWKR 14
           +PA RS   ++R P R+ R+  R
Sbjct: 639 SPARRSGRSRSRTPARRGRSRSR 661


>AF490258-1|AAO85466.1|  667|Homo sapiens XTP9 protein.
          Length = 667

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = -1

Query: 283 IGKNGISAERRNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSR 104
           +G++G  AER  +  VKE +S A         R  A PP+ +     V   +++G   + 
Sbjct: 432 LGRSGAPAEREAEPRVKESRSPAKEEAAKMPAR--ASPPHSKAAPGDVKVKEERGEDEAS 489

Query: 103 LSPSRWVNPA 74
             P+  ++PA
Sbjct: 490 EPPAGGLHPA 499


>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
           subunit SRm300 protein.
          Length = 2296

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 21/83 (25%), Positives = 35/83 (42%)
 Frame = -1

Query: 262 AERRNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWV 83
           A R   R     + ++  R  T+ +  +  P    R + R    ++  T S     SR  
Sbjct: 579 ARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 638

Query: 82  NPA*RSRIIQNRIPTRKSRNWKR 14
           +PA RS   ++R P R+ R+  R
Sbjct: 639 SPARRSGRSRSRTPARRGRSRSR 661


>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
           protein.
          Length = 2752

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 21/83 (25%), Positives = 35/83 (42%)
 Frame = -1

Query: 262 AERRNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWV 83
           A R   R     + ++  R  T+ +  +  P    R + R    ++  T S     SR  
Sbjct: 579 ARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 638

Query: 82  NPA*RSRIIQNRIPTRKSRNWKR 14
           +PA RS   ++R P R+ R+  R
Sbjct: 639 SPARRSGRSRSRTPARRGRSRSR 661


>AB016088-1|BAA83714.1|  956|Homo sapiens RNA binding protein
           protein.
          Length = 956

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 21/83 (25%), Positives = 35/83 (42%)
 Frame = -1

Query: 262 AERRNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWV 83
           A R   R     + ++  R  T+ +  +  P    R + R    ++  T S     SR  
Sbjct: 544 ARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 603

Query: 82  NPA*RSRIIQNRIPTRKSRNWKR 14
           +PA RS   ++R P R+ R+  R
Sbjct: 604 SPARRSGRSRSRTPARRGRSRSR 626


>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
           protein.
          Length = 1262

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 21/83 (25%), Positives = 35/83 (42%)
 Frame = -1

Query: 262 AERRNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWV 83
           A R   R     + ++  R  T+ +  +  P    R + R    ++  T S     SR  
Sbjct: 369 ARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 428

Query: 82  NPA*RSRIIQNRIPTRKSRNWKR 14
           +PA RS   ++R P R+ R+  R
Sbjct: 429 SPARRSGRSRSRTPARRGRSRSR 451


>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
          Length = 2800

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 21/83 (25%), Positives = 35/83 (42%)
 Frame = -1

Query: 262 AERRNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWV 83
           A R   R     + ++  R  T+ +  +  P    R + R    ++  T S     SR  
Sbjct: 627 ARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSR 686

Query: 82  NPA*RSRIIQNRIPTRKSRNWKR 14
           +PA RS   ++R P R+ R+  R
Sbjct: 687 SPARRSGRSRSRTPARRGRSRSR 709


>AB046765-1|BAB13371.2|  968|Homo sapiens KIAA1545 protein protein.
          Length = 968

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = -1

Query: 283 IGKNGISAERRNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSR 104
           +G++G  AER  +  VKE +S A         R  A PP+ +     V   +++G   + 
Sbjct: 733 LGRSGAPAEREAEPRVKESRSPAKEEVAKMPAR--ASPPHSKAAPGDVKVKEERGEDEAS 790

Query: 103 LSPSRWVNPA 74
             P+  ++PA
Sbjct: 791 EPPAGGLHPA 800


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,530,764
Number of Sequences: 237096
Number of extensions: 710729
Number of successful extensions: 3441
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3383
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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