SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A06
         (916 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D88213-1|BAA19001.1|  729|Homo sapiens retina-specific amine oxi...    35   0.47 
DQ060035-1|AAY43129.1|  756|Homo sapiens amine oxidase, copper c...    35   0.47 
BC142641-1|AAI42642.1|  756|Homo sapiens amine oxidase, copper c...    35   0.47 
AF081363-1|AAD39345.1|  756|Homo sapiens retina copper-containin...    35   0.47 
AB012943-2|BAA32590.1|  756|Homo sapiens retina-specific amine o...    35   0.47 
AB012943-1|BAA32589.1|  729|Homo sapiens retina-specific amine o...    35   0.47 
BC034019-1|AAH34019.1|  373|Homo sapiens LIM domain binding 2 pr...    31   4.4  
AK127255-1|BAC86902.1| 1007|Homo sapiens protein ( Homo sapiens ...    31   4.4  
AF068651-1|AAC77817.1|  373|Homo sapiens LIM-domain binding fact...    31   4.4  
AF064492-1|AAC28342.1|  373|Homo sapiens LIM homeobox protein co...    31   4.4  
AF047337-1|AAC83552.1|  373|Homo sapiens LIM homeobox protein co...    31   4.4  
AC002398-4|AAB81198.1|  903|Homo sapiens F25965_3 protein.             31   4.4  
AF064493-1|AAC28343.1|  331|Homo sapiens LIM homeobox protein co...    31   5.8  
AF052389-1|AAC13274.1|  347|Homo sapiens LIM domain binding prot...    31   7.7  

>D88213-1|BAA19001.1|  729|Homo sapiens retina-specific amine
           oxidase protein.
          Length = 729

 Score = 34.7 bits (76), Expect = 0.47
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 500 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 372
           LH +G+E  L   +   AHW + QV  LGHY+ +L +   E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277


>DQ060035-1|AAY43129.1|  756|Homo sapiens amine oxidase, copper
           containing 2 (retina-specific) protein.
          Length = 756

 Score = 34.7 bits (76), Expect = 0.47
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 500 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 372
           LH +G+E  L   +   AHW + QV  LGHY+ +L +   E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277


>BC142641-1|AAI42642.1|  756|Homo sapiens amine oxidase, copper
           containing 2 (retina-specific) protein.
          Length = 756

 Score = 34.7 bits (76), Expect = 0.47
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 500 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 372
           LH +G+E  L   +   AHW + QV  LGHY+ +L +   E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277


>AF081363-1|AAD39345.1|  756|Homo sapiens retina copper-containing
           monoamine oxidase protein.
          Length = 756

 Score = 34.7 bits (76), Expect = 0.47
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 500 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 372
           LH +G+E  L   +   AHW + QV  LGHY+ +L +   E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277


>AB012943-2|BAA32590.1|  756|Homo sapiens retina-specific amine
           oxidase protein.
          Length = 756

 Score = 34.7 bits (76), Expect = 0.47
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 500 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 372
           LH +G+E  L   +   AHW + QV  LGHY+ +L +   E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277


>AB012943-1|BAA32589.1|  729|Homo sapiens retina-specific amine
           oxidase protein.
          Length = 729

 Score = 34.7 bits (76), Expect = 0.47
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 500 LHQLGVEFFLGLDSWS-AHWNMHQVAILGHYHLELKEYHLEWFS 372
           LH +G+E  L   +   AHW + QV  LGHY+ +L +   E+ S
Sbjct: 234 LHPVGLELLLDHRALDPAHWTVQQVFYLGHYYADLGQLEREFKS 277


>BC034019-1|AAH34019.1|  373|Homo sapiens LIM domain binding 2
           protein.
          Length = 373

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = +2

Query: 146 CLLLLXSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALN---K 316
           CL      + A        PT   R R   T  T+N+ +  +  S GS K+ TA N    
Sbjct: 234 CLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLS 293

Query: 317 NQIPKTNV 340
           +Q+P   V
Sbjct: 294 SQVPDVMV 301


>AK127255-1|BAC86902.1| 1007|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45322 fis, clone BRHIP3006294, moderately
           similar to Mus musculus Cdc42 GTPase-activating protein
           (Cdgap). ).
          Length = 1007

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 82  LHIADRMSQIAEEQKLEESDGLPPAS 159
           L +A+R  Q+AE+Q  +E  G PPAS
Sbjct: 766 LALAERAQQVAEQQSQQECGGTPPAS 791


>AF068651-1|AAC77817.1|  373|Homo sapiens LIM-domain binding factor
           CLIM1 protein.
          Length = 373

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = +2

Query: 146 CLLLLXSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALN---K 316
           CL      + A        PT   R R   T  T+N+ +  +  S GS K+ TA N    
Sbjct: 234 CLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLS 293

Query: 317 NQIPKTNV 340
           +Q+P   V
Sbjct: 294 SQVPDVMV 301


>AF064492-1|AAC28342.1|  373|Homo sapiens LIM homeobox protein
           cofactor protein.
          Length = 373

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = +2

Query: 146 CLLLLXSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALN---K 316
           CL      + A        PT   R R   T  T+N+ +  +  S GS K+ TA N    
Sbjct: 234 CLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLS 293

Query: 317 NQIPKTNV 340
           +Q+P   V
Sbjct: 294 SQVPDVMV 301


>AF047337-1|AAC83552.1|  373|Homo sapiens LIM homeobox protein
           cofactor protein.
          Length = 373

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = +2

Query: 146 CLLLLXSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALN---K 316
           CL      + A        PT   R R   T  T+N+ +  +  S GS K+ TA N    
Sbjct: 234 CLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLS 293

Query: 317 NQIPKTNV 340
           +Q+P   V
Sbjct: 294 SQVPDVMV 301


>AC002398-4|AAB81198.1|  903|Homo sapiens F25965_3 protein.
          Length = 903

 Score = 31.5 bits (68), Expect = 4.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 82  LHIADRMSQIAEEQKLEESDGLPPAS 159
           L +A+R  Q+AE+Q  +E  G PPAS
Sbjct: 518 LALAERAQQVAEQQSQQECGGTPPAS 543


>AF064493-1|AAC28343.1|  331|Homo sapiens LIM homeobox protein
           cofactor protein.
          Length = 331

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +2

Query: 146 CLLLLXSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALN---K 316
           CL      + A        PT   R R   T  T+N+ +  +  S GS K+ TA N    
Sbjct: 234 CLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLS 293

Query: 317 NQIP 328
           +Q+P
Sbjct: 294 SQVP 297


>AF052389-1|AAC13274.1|  347|Homo sapiens LIM domain binding protein
           protein.
          Length = 347

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +2

Query: 146 CLLLLXSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALN 313
           CL      + A        PT   R R   T  T+N+ +  +  S GS K+ TA N
Sbjct: 210 CLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAAN 265


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,264,729
Number of Sequences: 237096
Number of extensions: 2233397
Number of successful extensions: 8688
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8685
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11881370308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -