SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0010
         (758 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC007456-1|AAH07456.1|  420|Homo sapiens GDP-mannose pyrophospho...   105   2e-22
AK222951-1|BAD96671.1|  420|Homo sapiens GDP-mannose pyrophospho...   105   2e-22
AK000999-1|BAA91460.1|  420|Homo sapiens protein ( Homo sapiens ...   105   2e-22
AC053503-4|AAY15053.1|  420|Homo sapiens unknown protein.             105   2e-22
AF135422-1|AAD38517.1|  399|Homo sapiens GDP-mannose pyrophospho...    74   5e-13
BC008033-1|AAH08033.1|  360|Homo sapiens GDP-mannose pyrophospho...    43   0.001
BC001141-1|AAH01141.1|  360|Homo sapiens GDP-mannose pyrophospho...    43   0.001
AK024319-1|BAB14882.1|  387|Homo sapiens protein ( Homo sapiens ...    43   0.001
AF135421-1|AAD38516.1|  360|Homo sapiens GDP-mannose pyrophospho...    43   0.001
AY450393-1|AAR21086.1|  144|Homo sapiens DNA polymerase-transact...    31   4.5  
AY450389-1|AAR21082.1|  144|Homo sapiens DNA polymerase-transact...    31   4.5  
AK091785-1|BAC03748.1|  144|Homo sapiens protein ( Homo sapiens ...    31   4.5  

>BC007456-1|AAH07456.1|  420|Homo sapiens GDP-mannose
           pyrophosphorylase A protein.
          Length = 420

 Score =  105 bits (252), Expect = 2e-22
 Identities = 48/86 (55%), Positives = 67/86 (77%)
 Frame = +3

Query: 252 KESIILENATVNEHSLIMYSVVGREASVGEWSRVEGTPSDPDPNKPFAKMDNRPLFNTDG 431
           +ESI+L  AT+ EH+ +++S+VG  ++VG W+RVEGTPSDP+PN P A+MD+  LF  DG
Sbjct: 320 RESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVEGTPSDPNPNDPRARMDSESLFK-DG 378

Query: 432 RLNPSITILGAGVVVXAETILLNSIV 509
           +L P+ITILG  V + AE ++LNSIV
Sbjct: 379 KLLPAITILGCRVRIPAEVLILNSIV 404



 Score = 67.7 bits (158), Expect = 4e-11
 Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 9/91 (9%)
 Frame = +1

Query: 10  LAGTNKLYSMQVSSWWSQVKXAGSAIYANRHCLTLHCTR--DDVCQIIP-------DVYI 162
           LAG  ++Y       WSQ+K AGSA+YA+R  L+ +     + + +  P       +VYI
Sbjct: 230 LAGQGQIYVHLTDGIWSQIKSAGSALYASRLYLSRYQDTHPERLAKHTPGGPWIRGNVYI 289

Query: 163 HPXASVDSTAVIGPNVSIGTGVTIKAGVRIK 255
           HP A V  +AV+GPNVSIG GVT+  GVR++
Sbjct: 290 HPTAKVAPSAVLGPNVSIGKGVTVGEGVRLR 320


>AK222951-1|BAD96671.1|  420|Homo sapiens GDP-mannose
           pyrophosphorylase A variant protein.
          Length = 420

 Score =  105 bits (252), Expect = 2e-22
 Identities = 48/86 (55%), Positives = 67/86 (77%)
 Frame = +3

Query: 252 KESIILENATVNEHSLIMYSVVGREASVGEWSRVEGTPSDPDPNKPFAKMDNRPLFNTDG 431
           +ESI+L  AT+ EH+ +++S+VG  ++VG W+RVEGTPSDP+PN P A+MD+  LF  DG
Sbjct: 320 RESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVEGTPSDPNPNDPRARMDSESLFK-DG 378

Query: 432 RLNPSITILGAGVVVXAETILLNSIV 509
           +L P+ITILG  V + AE ++LNSIV
Sbjct: 379 KLLPAITILGCRVRIPAEVLILNSIV 404



 Score = 67.7 bits (158), Expect = 4e-11
 Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 9/91 (9%)
 Frame = +1

Query: 10  LAGTNKLYSMQVSSWWSQVKXAGSAIYANRHCLTLHCTR--DDVCQIIP-------DVYI 162
           LAG  ++Y       WSQ+K AGSA+YA+R  L+ +     + + +  P       +VYI
Sbjct: 230 LAGQGQIYVHLTDGIWSQIKSAGSALYASRLYLSRYQDTHPERLAKHTPGGPWIRGNVYI 289

Query: 163 HPXASVDSTAVIGPNVSIGTGVTIKAGVRIK 255
           HP A V  +AV+GPNVSIG GVT+  GVR++
Sbjct: 290 HPTAKVAPSAVLGPNVSIGKGVTVGEGVRLR 320


>AK000999-1|BAA91460.1|  420|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10137 fis, clone HEMBA1003136, weakly similar to
           MANNOSE-1-PHOSPHATE GUANYLTRANSFERASE (EC 2.7.7.13). ).
          Length = 420

 Score =  105 bits (252), Expect = 2e-22
 Identities = 48/86 (55%), Positives = 67/86 (77%)
 Frame = +3

Query: 252 KESIILENATVNEHSLIMYSVVGREASVGEWSRVEGTPSDPDPNKPFAKMDNRPLFNTDG 431
           +ESI+L  AT+ EH+ +++S+VG  ++VG W+RVEGTPSDP+PN P A+MD+  LF  DG
Sbjct: 320 RESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVEGTPSDPNPNDPRARMDSESLFK-DG 378

Query: 432 RLNPSITILGAGVVVXAETILLNSIV 509
           +L P+ITILG  V + AE ++LNSIV
Sbjct: 379 KLLPAITILGCRVRIPAEVLILNSIV 404



 Score = 67.7 bits (158), Expect = 4e-11
 Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 9/91 (9%)
 Frame = +1

Query: 10  LAGTNKLYSMQVSSWWSQVKXAGSAIYANRHCLTLHCTR--DDVCQIIP-------DVYI 162
           LAG  ++Y       WSQ+K AGSA+YA+R  L+ +     + + +  P       +VYI
Sbjct: 230 LAGQGQIYVHLTDGIWSQIKSAGSALYASRLYLSRYQDTHPERLAKHTPGGPWIRGNVYI 289

Query: 163 HPXASVDSTAVIGPNVSIGTGVTIKAGVRIK 255
           HP A V  +AV+GPNVSIG GVT+  GVR++
Sbjct: 290 HPTAKVAPSAVLGPNVSIGKGVTVGEGVRLR 320


>AC053503-4|AAY15053.1|  420|Homo sapiens unknown protein.
          Length = 420

 Score =  105 bits (252), Expect = 2e-22
 Identities = 48/86 (55%), Positives = 67/86 (77%)
 Frame = +3

Query: 252 KESIILENATVNEHSLIMYSVVGREASVGEWSRVEGTPSDPDPNKPFAKMDNRPLFNTDG 431
           +ESI+L  AT+ EH+ +++S+VG  ++VG W+RVEGTPSDP+PN P A+MD+  LF  DG
Sbjct: 320 RESIVLHGATLQEHTCVLHSIVGWGSTVGRWARVEGTPSDPNPNDPRARMDSESLFK-DG 378

Query: 432 RLNPSITILGAGVVVXAETILLNSIV 509
           +L P+ITILG  V + AE ++LNSIV
Sbjct: 379 KLLPAITILGCRVRIPAEVLILNSIV 404



 Score = 67.7 bits (158), Expect = 4e-11
 Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 9/91 (9%)
 Frame = +1

Query: 10  LAGTNKLYSMQVSSWWSQVKXAGSAIYANRHCLTLHCTR--DDVCQIIP-------DVYI 162
           LAG  ++Y       WSQ+K AGSA+YA+R  L+ +     + + +  P       +VYI
Sbjct: 230 LAGQGQIYVHLTDGIWSQIKSAGSALYASRLYLSRYQDTHPERLAKHTPGGPWIRGNVYI 289

Query: 163 HPXASVDSTAVIGPNVSIGTGVTIKAGVRIK 255
           HP A V  +AV+GPNVSIG GVT+  GVR++
Sbjct: 290 HPTAKVAPSAVLGPNVSIGKGVTVGEGVRLR 320


>AF135422-1|AAD38517.1|  399|Homo sapiens GDP-mannose
           pyrophosphorylase A protein.
          Length = 399

 Score = 74.1 bits (174), Expect = 5e-13
 Identities = 62/168 (36%), Positives = 83/168 (49%), Gaps = 14/168 (8%)
 Frame = +1

Query: 10  LAGTNKLYSMQVSSWWSQVKXAGSAIYANRHCLTLHCTR--DDVCQIIP-------DVYI 162
           LAG  ++Y       WSQ+K AGSA+YA+R  L+ +     + + +  P       +VYI
Sbjct: 230 LAGQGQIYVHLTDGIWSQIKSAGSALYASRLYLSRYQDTHPERLAKHTPGGPWIRGNVYI 289

Query: 163 HPXASVDSTAVIGPNVSIGTGVTIKAGVRIKNQ--*YSKTRP*MSTP*SCIL---LSVGK 327
           HP A V  +AV+GPNVSIG GVT+  GVR++     +  T    +    CI+    +VG+
Sbjct: 290 HPTAKVAPSAVLGPNVSIGKGVTVGEGVRLRESIVLHGATLQEHTCVLHCIVGWGSTVGR 349

Query: 328 LQWANGRV*KELLQILIRTNPSPRWTTDRYSIRTDDSTRLSLYWVQES 471
             WA   V       L  T P P WT  R S RT     LS  W  ES
Sbjct: 350 --WARVEVPP---VTLTPTIPEPAWTV-RASSRTGSCCLLSPSWAAES 391


>BC008033-1|AAH08033.1|  360|Homo sapiens GDP-mannose
           pyrophosphorylase B protein.
          Length = 360

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
 Frame = +1

Query: 10  LAGTNKLYSMQVSSWWSQVKXAGSAIYANRHCLTLHCTR----DDVCQ---IIPDVYIHP 168
           +A   +LY+M++  +W  +       +    CL L   R    + +C    I+ +V + P
Sbjct: 201 MAKEGQLYAMELQGFWMDIGQPKD--FLTGMCLFLQSLRQKQPERLCSGPGIVGNVLVDP 258

Query: 169 XASVDSTAVIGPNVSIGTGVTIKAGVRIK 255
            A +     IGPNVS+G GV ++ GV I+
Sbjct: 259 SARIGQNCSIGPNVSLGPGVVVEDGVCIR 287


>BC001141-1|AAH01141.1|  360|Homo sapiens GDP-mannose
           pyrophosphorylase B protein.
          Length = 360

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
 Frame = +1

Query: 10  LAGTNKLYSMQVSSWWSQVKXAGSAIYANRHCLTLHCTR----DDVCQ---IIPDVYIHP 168
           +A   +LY+M++  +W  +       +    CL L   R    + +C    I+ +V + P
Sbjct: 201 MAKEGQLYAMELQGFWMDIGQPKD--FLTGMCLFLQSLRQKQPERLCSGPGIVGNVLVDP 258

Query: 169 XASVDSTAVIGPNVSIGTGVTIKAGVRIK 255
            A +     IGPNVS+G GV ++ GV I+
Sbjct: 259 SARIGQNCSIGPNVSLGPGVVVEDGVCIR 287


>AK024319-1|BAB14882.1|  387|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14257 fis, clone PLACE1000547, highly similar to
           Homo sapiens GDP-mannose pyrophosphorylase B (GMPPB)
           mRNA. ).
          Length = 387

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
 Frame = +1

Query: 10  LAGTNKLYSMQVSSWWSQVKXAGSAIYANRHCLTLHCTR----DDVCQ---IIPDVYIHP 168
           +A   +LY+M++  +W  +       +    CL L   R    + +C    I+ +V + P
Sbjct: 201 MAKEGQLYAMELQGFWMDIGQPKD--FLTGMCLFLQSLRQKQPERLCSGPGIVGNVLVDP 258

Query: 169 XASVDSTAVIGPNVSIGTGVTIKAGVRIK 255
            A +     IGPNVS+G GV ++ GV I+
Sbjct: 259 SARIGQNCSIGPNVSLGPGVVVEDGVCIR 287


>AF135421-1|AAD38516.1|  360|Homo sapiens GDP-mannose
           pyrophosphorylase B protein.
          Length = 360

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
 Frame = +1

Query: 10  LAGTNKLYSMQVSSWWSQVKXAGSAIYANRHCLTLHCTR----DDVCQ---IIPDVYIHP 168
           +A   +LY+M++  +W  +       +    CL L   R    + +C    I+ +V + P
Sbjct: 201 MAKEGQLYAMELQGFWMDIGQPKD--FLTGMCLFLQSLRQKQPERLCSGPGIVGNVLVDP 258

Query: 169 XASVDSTAVIGPNVSIGTGVTIKAGVRIK 255
            A +     IGPNVS+G GV ++ GV I+
Sbjct: 259 SARIGQNCSIGPNVSLGPGVVVEDGVCIR 287


>AY450393-1|AAR21086.1|  144|Homo sapiens DNA
           polymerase-transactivated protein 5 protein.
          Length = 144

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 21/52 (40%), Positives = 26/52 (50%)
 Frame = +2

Query: 386 TLRQDGQPTAIQYGRTTQPVYHYIGCRSRGTR*DDFVKLHSLPHKHXARSFK 541
           TLR  GQP    +G  T+P YH +  RS G        L SLP +  A SF+
Sbjct: 8   TLRCVGQP---HHGEWTEPAYHMLRLRSPGLMIGAIQDLSSLPSQR-AMSFR 55


>AY450389-1|AAR21082.1|  144|Homo sapiens DNA
           polymerase-transactivated protein 1 protein.
          Length = 144

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 21/52 (40%), Positives = 26/52 (50%)
 Frame = +2

Query: 386 TLRQDGQPTAIQYGRTTQPVYHYIGCRSRGTR*DDFVKLHSLPHKHXARSFK 541
           TLR  GQP    +G  T+P YH +  RS G        L SLP +  A SF+
Sbjct: 8   TLRCVGQP---HHGEWTEPAYHMLRLRSPGLMIGAIQDLSSLPSQR-AMSFR 55


>AK091785-1|BAC03748.1|  144|Homo sapiens protein ( Homo sapiens
           cDNA FLJ34466 fis, clone HLUNG2003162. ).
          Length = 144

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 21/52 (40%), Positives = 26/52 (50%)
 Frame = +2

Query: 386 TLRQDGQPTAIQYGRTTQPVYHYIGCRSRGTR*DDFVKLHSLPHKHXARSFK 541
           TLR  GQP    +G  T+P YH +  RS G        L SLP +  A SF+
Sbjct: 8   TLRCVGQP---HHGEWTEPAYHMLRLRSPGLMIGAIQDLSSLPSQR-AMSFR 55


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,915,459
Number of Sequences: 237096
Number of extensions: 2099420
Number of successful extensions: 4642
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4632
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -