SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0009
         (751 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ564970-1|CAD92441.1|  106|Homo sapiens protocadherin protein.        46   2e-04
AJ564969-1|CAD92440.1|  222|Homo sapiens protocadherin protein.        46   2e-04
AF332217-1|AAK13469.1| 1340|Homo sapiens protocadherin 11 protein.     46   2e-04
AY861434-1|AAX56124.1| 1329|Homo sapiens protocadherin 11X isofo...    43   0.001
AY861433-1|AAX56123.1| 1310|Homo sapiens protocadherin 11X isofo...    43   0.001
AY861432-1|AAX56122.1| 1339|Homo sapiens protocadherin 11X isofo...    43   0.001
AL133321-2|CAI41436.1| 1337|Homo sapiens protocadherin 11 X-link...    43   0.001
AL133321-1|CAI41435.1| 1347|Homo sapiens protocadherin 11 X-link...    43   0.001
AL133274-3|CAI41631.1| 1337|Homo sapiens protocadherin 11 X-link...    43   0.001
AL133274-2|CAI41629.1| 1310|Homo sapiens protocadherin 11 X-link...    43   0.001
AL133274-1|CAI41630.1| 1347|Homo sapiens protocadherin 11 X-link...    43   0.001
AL121869-5|CAI41414.1| 1337|Homo sapiens protocadherin 11 X-link...    43   0.001
AL121869-4|CAI41412.1| 1310|Homo sapiens protocadherin 11 X-link...    43   0.001
AL121869-3|CAI41413.1| 1347|Homo sapiens protocadherin 11 X-link...    43   0.001
AJ564946-1|CAD92425.1|  177|Homo sapiens protocadherin protein.        43   0.001
AJ564945-1|CAD92424.1|  224|Homo sapiens protocadherin protein.        43   0.001
AF332219-1|AAK13471.1| 1337|Homo sapiens protocadherin 11 protein.     43   0.001
AF332218-1|AAK13470.1| 1347|Homo sapiens protocadherin 11 protein.     43   0.001
AF217288-1|AAK82656.1| 1310|Homo sapiens protocadherin-S protein.      43   0.001
AF206516-1|AAK82655.1| 1347|Homo sapiens protocadherin-S protein.      43   0.001
AB037747-1|BAA92564.1|  424|Homo sapiens KIAA1326 protein protein.     43   0.001
AK096940-1|BAC04906.1|  226|Homo sapiens protein ( Homo sapiens ...    34   0.63 
X90569-1|CAA62189.1| 7962|Homo sapiens elastic titin protein.          33   0.83 
AJ277892-2|CAD12456.1|30017|Homo sapiens Titin protein.                33   0.83 
AK094959-1|BAC04461.1|  148|Homo sapiens protein ( Homo sapiens ...    32   1.9  
AF417580-1|AAL86401.2|  906|Homo sapiens transmembrane channel-l...    32   1.9  
AF020267-1|AAC26597.1|  223|Homo sapiens myosin-IXb splice varia...    32   1.9  
L09190-1|AAA65582.1| 1898|Homo sapiens trichohyalin protein.           32   2.5  
BC030644-1|AAH30644.1|  641|Homo sapiens regulatory factor X, 4 ...    32   2.5  
BC028582-1|AAH28582.1|  641|Homo sapiens regulatory factor X, 4 ...    32   2.5  
AY102009-1|AAM52484.1|  735|Homo sapiens winged-helix transcript...    32   2.5  
AL833921-1|CAD38777.1|  480|Homo sapiens hypothetical protein pr...    32   2.5  
AL589986-1|CAH70024.1| 1943|Homo sapiens trichohyalin protein.         32   2.5  
AL049712-6|CAI22420.2|  906|Homo sapiens transmembrane channel-l...    32   2.5  
AK074913-1|BAC11288.1|  592|Homo sapiens protein ( Homo sapiens ...    32   2.5  
BC014233-1|AAH14233.2|  235|Homo sapiens MGC20647 protein protein.     31   4.4  
BC008289-1|AAH08289.1|  240|Homo sapiens MGC20647 protein protein.     31   4.4  
BC033649-1|AAH33649.1|  274|Homo sapiens PRR7 protein protein.         31   5.8  
BC032473-1|AAH32473.1|  778|Homo sapiens melanoma antigen family...    31   5.8  
BC024233-1|AAH24233.2|  274|Homo sapiens proline rich 7 (synapti...    31   5.8  
BC014070-1|AAH14070.1|  834|Homo sapiens melanoma antigen family...    31   5.8  
AL929410-2|CAH71561.1|  834|Homo sapiens melanoma antigen family...    31   5.8  
AL929410-1|CAH71560.1|  778|Homo sapiens melanoma antigen family...    31   5.8  
AL133628-1|CAB63752.1|  476|Homo sapiens hypothetical protein pr...    31   5.8  
AK074092-1|BAB84918.1|  521|Homo sapiens FLJ00163 protein protein.     31   5.8  
AF332192-1|AAK17191.1|  641|Homo sapiens transcription factor NY...    31   5.8  
AF300328-1|AAQ14483.1|  778|Homo sapiens MAGE tumor antigen CCF ...    31   5.8  
AF258554-1|AAG23757.1|  778|Homo sapiens PP2250 protein.               31   5.8  
AF217963-1|AAG09704.1|  778|Homo sapiens NRAGE protein.                31   5.8  
AF124440-1|AAD31421.1|  574|Homo sapiens MAGE tumor antigen D1 p...    31   5.8  
AB195785-1|BAE48238.1|  370|Homo sapiens regulatory factor X4 is...    31   5.8  
AB195784-1|BAE48237.1|  390|Homo sapiens regulatory factor X4 is...    31   5.8  
AB095366-1|BAE48232.1|  735|Homo sapiens regulatory factor X4, i...    31   5.8  
AB095365-1|BAE48231.1|  744|Homo sapiens regulatory factor X4, i...    31   5.8  

>AJ564970-1|CAD92441.1|  106|Homo sapiens protocadherin protein.
          Length = 106

 Score = 45.6 bits (103), Expect = 2e-04
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = +3

Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
           HS PV  +  + HS PV  +  L HS P +  + L HS P+V   +L+H+ P
Sbjct: 15  HSPPVTQTIVLCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQGTALHHSPP 66


>AJ564969-1|CAD92440.1|  222|Homo sapiens protocadherin protein.
          Length = 222

 Score = 45.6 bits (103), Expect = 2e-04
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = +3

Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
           HS PV  +  + HS PV  +  L HS P +  + L HS P+V   +L+H+ P
Sbjct: 60  HSPPVTQTIVLCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQGTALHHSPP 111


>AF332217-1|AAK13469.1| 1340|Homo sapiens protocadherin 11 protein.
          Length = 1340

 Score = 45.6 bits (103), Expect = 2e-04
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = +3

Query: 417  HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
            HS PV  +  + HS PV  +  L HS P +  + L HS P+V   +L+H+ P
Sbjct: 1178 HSPPVTQTIVLCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQGTALHHSPP 1229


>AY861434-1|AAX56124.1| 1329|Homo sapiens protocadherin 11X isoform 6
            protein.
          Length = 1329

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 417  HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
            HS  V  +  + HS PV  +  L HS P +  + L HS P+V   +L+H+ P
Sbjct: 1167 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1218


>AY861433-1|AAX56123.1| 1310|Homo sapiens protocadherin 11X isoform 7
            protein.
          Length = 1310

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 417  HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
            HS  V  +  + HS PV  +  L HS P +  + L HS P+V   +L+H+ P
Sbjct: 1148 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1199


>AY861432-1|AAX56122.1| 1339|Homo sapiens protocadherin 11X isoform 8
            protein.
          Length = 1339

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 417  HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
            HS  V  +  + HS PV  +  L HS P +  + L HS P+V   +L+H+ P
Sbjct: 1177 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1228


>AL133321-2|CAI41436.1| 1337|Homo sapiens protocadherin 11 X-linked
            protein.
          Length = 1337

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 417  HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
            HS  V  +  + HS PV  +  L HS P +  + L HS P+V   +L+H+ P
Sbjct: 1175 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1226


>AL133321-1|CAI41435.1| 1347|Homo sapiens protocadherin 11 X-linked
            protein.
          Length = 1347

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 417  HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
            HS  V  +  + HS PV  +  L HS P +  + L HS P+V   +L+H+ P
Sbjct: 1185 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1236


>AL133274-3|CAI41631.1| 1337|Homo sapiens protocadherin 11 X-linked
            protein.
          Length = 1337

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 417  HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
            HS  V  +  + HS PV  +  L HS P +  + L HS P+V   +L+H+ P
Sbjct: 1175 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1226


>AL133274-2|CAI41629.1| 1310|Homo sapiens protocadherin 11 X-linked
            protein.
          Length = 1310

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 417  HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
            HS  V  +  + HS PV  +  L HS P +  + L HS P+V   +L+H+ P
Sbjct: 1148 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1199


>AL133274-1|CAI41630.1| 1347|Homo sapiens protocadherin 11 X-linked
            protein.
          Length = 1347

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 417  HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
            HS  V  +  + HS PV  +  L HS P +  + L HS P+V   +L+H+ P
Sbjct: 1185 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1236


>AL121869-5|CAI41414.1| 1337|Homo sapiens protocadherin 11 X-linked
            protein.
          Length = 1337

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 417  HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
            HS  V  +  + HS PV  +  L HS P +  + L HS P+V   +L+H+ P
Sbjct: 1175 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1226


>AL121869-4|CAI41412.1| 1310|Homo sapiens protocadherin 11 X-linked
            protein.
          Length = 1310

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 417  HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
            HS  V  +  + HS PV  +  L HS P +  + L HS P+V   +L+H+ P
Sbjct: 1148 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1199


>AL121869-3|CAI41413.1| 1347|Homo sapiens protocadherin 11 X-linked
            protein.
          Length = 1347

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 417  HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
            HS  V  +  + HS PV  +  L HS P +  + L HS P+V   +L+H+ P
Sbjct: 1185 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1236


>AJ564946-1|CAD92425.1|  177|Homo sapiens protocadherin protein.
          Length = 177

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
           HS  V  +  + HS PV  +  L HS P +  + L HS P+V   +L+H+ P
Sbjct: 15  HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 66


>AJ564945-1|CAD92424.1|  224|Homo sapiens protocadherin protein.
          Length = 224

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
           HS  V  +  + HS PV  +  L HS P +  + L HS P+V   +L+H+ P
Sbjct: 62  HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 113


>AF332219-1|AAK13471.1| 1337|Homo sapiens protocadherin 11 protein.
          Length = 1337

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 417  HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
            HS  V  +  + HS PV  +  L HS P +  + L HS P+V   +L+H+ P
Sbjct: 1175 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1226


>AF332218-1|AAK13470.1| 1347|Homo sapiens protocadherin 11 protein.
          Length = 1347

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 417  HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
            HS  V  +  + HS PV  +  L HS P +  + L HS P+V   +L+H+ P
Sbjct: 1185 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1236


>AF217288-1|AAK82656.1| 1310|Homo sapiens protocadherin-S protein.
          Length = 1310

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 417  HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
            HS  V  +  + HS PV  +  L HS P +  + L HS P+V   +L+H+ P
Sbjct: 1148 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1199


>AF206516-1|AAK82655.1| 1347|Homo sapiens protocadherin-S protein.
          Length = 1347

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 417  HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
            HS  V  +  + HS PV  +  L HS P +  + L HS P+V   +L+H+ P
Sbjct: 1185 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 1236


>AB037747-1|BAA92564.1|  424|Homo sapiens KIAA1326 protein protein.
          Length = 424

 Score = 43.2 bits (97), Expect = 0.001
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
           HS  V  +  + HS PV  +  L HS P +  + L HS P+V   +L+H+ P
Sbjct: 262 HSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPP 313


>AK096940-1|BAC04906.1|  226|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39621 fis, clone SMINT2001158. ).
          Length = 226

 Score = 33.9 bits (74), Expect = 0.63
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYH 563
           H+ P+ H  P+ H+    H+  L HS   +H+    H+ P+ HT++  H
Sbjct: 154 HTYPITH--PLTHTPTHTHTHALTHSHTHIHTHMHSHTHPLTHTSTHTH 200



 Score = 33.1 bits (72), Expect = 1.1
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
           H++   H     H+ P+ H  PL H+    H+  L HS   +HT    H  P
Sbjct: 142 HTSTHTHPLTFTHTYPITH--PLTHTPTHTHTHALTHSHTHIHTHMHSHTHP 191



 Score = 31.5 bits (68), Expect = 3.3
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 417 HSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHA 566
           HS    H     H++   H     H+ P+ H  PL H+    HT +L H+
Sbjct: 130 HSHTHAHKHTYTHTSTHTHPLTFTHTYPITH--PLTHTPTHTHTHALTHS 177


>X90569-1|CAA62189.1| 7962|Homo sapiens elastic titin protein.
          Length = 7962

 Score = 33.5 bits (73), Expect = 0.83
 Identities = 23/69 (33%), Positives = 33/69 (47%)
 Frame = -2

Query: 657  EKFLFNDERRCSVLVQRVRRAREELSVQEEWRGTETLCGQRGRSELGERSEPRERSELGE 478
            EK    +E+    + QRV   R E+S +EEW  +E    + G S    R E RE  E  E
Sbjct: 6130 EKRFVAEEKLSFAVPQRVEVTRHEVSAEEEWSYSEE---EEGVSISVYREEEREEEEEAE 6186

Query: 477  RSEPQGLNE 451
             +E + + E
Sbjct: 6187 VTEYEVMEE 6195


>AJ277892-2|CAD12456.1|30017|Homo sapiens Titin protein.
          Length = 30000

 Score = 33.5 bits (73), Expect = 0.83
 Identities = 23/69 (33%), Positives = 33/69 (47%)
 Frame = -2

Query: 657   EKFLFNDERRCSVLVQRVRRAREELSVQEEWRGTETLCGQRGRSELGERSEPRERSELGE 478
             EK    +E+    + QRV   R E+S +EEW  +E    + G S    R E RE  E  E
Sbjct: 10392 EKRFVAEEKLSFAVPQRVEVTRHEVSAEEEWSYSEE---EEGVSISVYREEEREEEEEAE 10448

Query: 477   RSEPQGLNE 451
              +E + + E
Sbjct: 10449 VTEYEVMEE 10457


>AK094959-1|BAC04461.1|  148|Homo sapiens protein ( Homo sapiens
           cDNA FLJ37640 fis, clone BRHIP1000174. ).
          Length = 148

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 414 IHSAPVLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
           + S+PV+H     H  P+  +  L+ S+PV+H     H  P+  T +L  ++P
Sbjct: 71  VSSSPVIHEVQCCHH-PLGSTMTLVSSSPVIHEVQCCHH-PLGSTITLVSSSP 121


>AF417580-1|AAL86401.2|  906|Homo sapiens transmembrane channel-like
           protein 2 protein.
          Length = 906

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -2

Query: 603 RRAREELSVQEEWRGTETLCGQRGRSE---LGERSEPRERSELGERSEPQGLNELQGQSE 433
           RR REEL  QE      T  G+R R E     ER+   +R +   R E +   + + +S 
Sbjct: 77  RRHREELGEQERGEAERTCEGRRKRDERASFQERTAAPKREKEIPRKEEKSKRQKKPRSS 136

Query: 432 ALEQSESQGQ 403
           +L  S S G+
Sbjct: 137 SLASSASGGE 146


>AF020267-1|AAC26597.1|  223|Homo sapiens myosin-IXb splice variant
           protein.
          Length = 223

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 61  LQSCTTLRFQLPSNTPIMS--KIMLPRSMSSHIPSRIP 168
           L S  T+R + P  TPIMS   I LP  + SH+P   P
Sbjct: 110 LSSFVTVRVKTPRRTPIMSTANIKLPPGLPSHLPRWAP 147


>L09190-1|AAA65582.1| 1898|Homo sapiens trichohyalin protein.
          Length = 1898

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = -2

Query: 612 QRVRRAREELSVQEE----WRGTETLCGQRGRSELGERSEPRERSELGERSEPQGLNELQ 445
           Q+ RR R++   QEE    WR  ET+   R   E  +  EP+ + EL E  E + L +L+
Sbjct: 227 QQQRRERQDRVFQEEEEKEWRKRETVL--RKEEEKLQEEEPQRQRELQE--EEEQLRKLE 282

Query: 444 GQSEALEQSESQGQ 403
            Q    E+ E + Q
Sbjct: 283 RQELRRERQEEEQQ 296



 Score = 31.1 bits (67), Expect = 4.4
 Identities = 22/83 (26%), Positives = 35/83 (42%)
 Frame = -2

Query: 657 EKFLFNDERRCSVLVQRVRRAREELSVQEEWRGTETLCGQRGRSELGERSEPRERSELGE 478
           E+F   ++ R   L++  R+ REE   Q   R       +  +      +  R+  E  +
Sbjct: 202 EEFPDEEQLRRRELLELRRKGREEKQQQRRERQDRVFQEEEEKEWRKRETVLRKEEEKLQ 261

Query: 477 RSEPQGLNELQGQSEALEQSESQ 409
             EPQ   ELQ + E L + E Q
Sbjct: 262 EEEPQRQRELQEEEEQLRKLERQ 284


>BC030644-1|AAH30644.1|  641|Homo sapiens regulatory factor X, 4
           (influences HLA class II expression) protein.
          Length = 641

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLY 560
           ++ S P +H TPV    P + SA   +++P VHS    +++ +Y
Sbjct: 565 LMSSTPRLHPTPVTPRWPEVPSANTCYTSPSVHSARYGNSSDMY 608


>BC028582-1|AAH28582.1|  641|Homo sapiens regulatory factor X, 4
           (influences HLA class II expression) protein.
          Length = 641

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLY 560
           ++ S P +H TPV    P + SA   +++P VHS    +++ +Y
Sbjct: 565 LMSSTPRLHPTPVTPRWPEVPSANTCYTSPSVHSARYGNSSDMY 608


>AY102009-1|AAM52484.1|  735|Homo sapiens winged-helix transcription
           factor RFX4 variant 3 protein.
          Length = 735

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLY 560
           ++ S P +H TPV    P + SA   +++P VHS    +++ +Y
Sbjct: 659 LMSSTPRLHPTPVTPRWPEVPSANTCYTSPSVHSARYGNSSDMY 702


>AL833921-1|CAD38777.1|  480|Homo sapiens hypothetical protein
           protein.
          Length = 480

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLY 560
           ++ S P +H TPV    P + SA   +++P VHS    +++ +Y
Sbjct: 404 LMSSTPRLHPTPVTPRWPEVPSANTCYTSPSVHSARYGNSSDMY 447


>AL589986-1|CAH70024.1| 1943|Homo sapiens trichohyalin protein.
          Length = 1943

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = -2

Query: 612 QRVRRAREELSVQEE----WRGTETLCGQRGRSELGERSEPRERSELGERSEPQGLNELQ 445
           Q+ RR R++   QEE    WR  ET+   R   E  +  EP+ + EL E  E + L +L+
Sbjct: 227 QQQRRERQDRVFQEEEEKEWRKRETVL--RKEEEKLQEEEPQRQRELQE--EEEQLRKLE 282

Query: 444 GQSEALEQSESQGQ 403
            Q    E+ E + Q
Sbjct: 283 RQELRRERQEEEQQ 296



 Score = 31.1 bits (67), Expect = 4.4
 Identities = 22/83 (26%), Positives = 35/83 (42%)
 Frame = -2

Query: 657 EKFLFNDERRCSVLVQRVRRAREELSVQEEWRGTETLCGQRGRSELGERSEPRERSELGE 478
           E+F   ++ R   L++  R+ REE   Q   R       +  +      +  R+  E  +
Sbjct: 202 EEFPDEEQLRRRELLELRRKGREEKQQQRRERQDRVFQEEEEKEWRKRETVLRKEEEKLQ 261

Query: 477 RSEPQGLNELQGQSEALEQSESQ 409
             EPQ   ELQ + E L + E Q
Sbjct: 262 EEEPQRQRELQEEEEQLRKLERQ 284


>AL049712-6|CAI22420.2|  906|Homo sapiens transmembrane channel-like
           2 protein.
          Length = 906

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -2

Query: 603 RRAREELSVQEEWRGTETLCGQRGRSE---LGERSEPRERSELGERSEPQGLNELQGQSE 433
           RR REEL  QE      T  G+R R E     ER+   +R +   R E +   + + +S 
Sbjct: 77  RRHREELGEQERGEAERTCEGRRKRDERASFQERTAAPKREKEIPRREEKSKRQKKPRSS 136

Query: 432 ALEQSESQGQ 403
           +L  S S G+
Sbjct: 137 SLASSASGGE 146


>AK074913-1|BAC11288.1|  592|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90432 fis, clone NT2RP3000677, weakly similar to
           DNA BINDING PROTEIN RFX2. ).
          Length = 592

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLY 560
           ++ S P +H TPV    P + SA   +++P VHS    +++ +Y
Sbjct: 516 LMSSTPRLHPTPVTPRWPEVPSANTCYTSPSVHSARYGNSSDMY 559


>BC014233-1|AAH14233.2|  235|Homo sapiens MGC20647 protein protein.
          Length = 235

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = -2

Query: 615 VQRVRRAREELSVQEE--WRGT----ETLCGQRGRSELGERSEPRERSELGERSEPQGLN 454
           +Q  RR R  L    +  W+G     E    +RGR  LGE +E R  SE  ER    G  
Sbjct: 10  LQAARRPRPSLGAARDRGWKGESGKKERKEKERGRVNLGESAEGRAASECPERG--GGGG 67

Query: 453 ELQGQSEALEQSES 412
           E +G+ E  E+  +
Sbjct: 68  EGEGEEEEEEEGSA 81


>BC008289-1|AAH08289.1|  240|Homo sapiens MGC20647 protein protein.
          Length = 240

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = -2

Query: 615 VQRVRRAREELSVQEE--WRGT----ETLCGQRGRSELGERSEPRERSELGERSEPQGLN 454
           +Q  RR R  L    +  W+G     E    +RGR  LGE +E R  SE  ER    G  
Sbjct: 15  LQAARRPRPSLGAARDRGWKGESGKKERKEKERGRVNLGESAEGRAASECPERG--GGGG 72

Query: 453 ELQGQSEALEQSES 412
           E +G+ E  E+  +
Sbjct: 73  EGEGEEEEEEEGSA 86


>BC033649-1|AAH33649.1|  274|Homo sapiens PRR7 protein protein.
          Length = 274

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 453 HSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
           HS P VH  PL+H  P   + P  H+ P  H  +L H  P
Sbjct: 91  HSHPHVHVHPLLHHGP---AQPHAHAHPHPHHHALPHPPP 127


>BC032473-1|AAH32473.1|  778|Homo sapiens melanoma antigen family D,
           1 protein.
          Length = 778

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 444 PVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
           PV    PV+   P+I   PV+   P+V  GPVV
Sbjct: 335 PVAWQNPVIWPNPVIWQNPVIWPNPIVWPGPVV 367


>BC024233-1|AAH24233.2|  274|Homo sapiens proline rich 7 (synaptic)
           protein.
          Length = 274

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 453 HSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLYHATP 572
           HS P VH  PL+H  P   + P  H+ P  H  +L H  P
Sbjct: 91  HSHPHVHVHPLLHHGP---AQPHAHAHPHPHHHALPHPPP 127


>BC014070-1|AAH14070.1|  834|Homo sapiens melanoma antigen family D,
           1 protein.
          Length = 834

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 444 PVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
           PV    PV+   P+I   PV+   P+V  GPVV
Sbjct: 391 PVAWQNPVIWPNPVIWQNPVIWPNPIVWPGPVV 423


>AL929410-2|CAH71561.1|  834|Homo sapiens melanoma antigen family D,
           1 protein.
          Length = 834

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 444 PVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
           PV    PV+   P+I   PV+   P+V  GPVV
Sbjct: 391 PVAWQNPVIWPNPVIWQNPVIWPNPIVWPGPVV 423


>AL929410-1|CAH71560.1|  778|Homo sapiens melanoma antigen family D,
           1 protein.
          Length = 778

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 444 PVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
           PV    PV+   P+I   PV+   P+V  GPVV
Sbjct: 335 PVAWQNPVIWPNPVIWQNPVIWPNPIVWPGPVV 367


>AL133628-1|CAB63752.1|  476|Homo sapiens hypothetical protein
           protein.
          Length = 476

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 444 PVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
           PV    PV+   P+I   PV+   P+V  GPVV
Sbjct: 33  PVAWQNPVIWPNPVIWQNPVIWPNPIVWPGPVV 65


>AK074092-1|BAB84918.1|  521|Homo sapiens FLJ00163 protein protein.
          Length = 521

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 444 PVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
           PV    PV+   P+I   PV+   P+V  GPVV
Sbjct: 349 PVAWQNPVIWPNPVIWQNPVIWPNPIVWPGPVV 381


>AF332192-1|AAK17191.1|  641|Homo sapiens transcription factor
           NYD-sp10 protein.
          Length = 641

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLY 560
           ++ S P +H TPV    P + SA   ++ P VHS    +++ +Y
Sbjct: 565 LMSSTPRLHPTPVTPRWPEVPSANTCYTNPSVHSARYGNSSDMY 608


>AF300328-1|AAQ14483.1|  778|Homo sapiens MAGE tumor antigen CCF
           protein.
          Length = 778

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 444 PVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
           PV    PV+   P+I   PV+   P+V  GPVV
Sbjct: 335 PVAWQNPVIWPNPVIWQNPVIWPNPIVWPGPVV 367


>AF258554-1|AAG23757.1|  778|Homo sapiens PP2250 protein.
          Length = 778

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 444 PVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
           PV    PV+   P+I   PV+   P+V  GPVV
Sbjct: 335 PVAWQNPVIWPNPVIWQNPVIWPNPIVWPGPVV 367


>AF217963-1|AAG09704.1|  778|Homo sapiens NRAGE protein.
          Length = 778

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 444 PVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
           PV    PV+   P+I   PV+   P+V  GPVV
Sbjct: 335 PVAWQNPVIWPNPVIWQNPVIWPNPIVWPGPVV 367


>AF124440-1|AAD31421.1|  574|Homo sapiens MAGE tumor antigen D1
           protein.
          Length = 574

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 444 PVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVV 542
           PV    PV+   P+I   PV+   P+V  GPVV
Sbjct: 131 PVAWQNPVIWPNPVIWQNPVIWPNPIVWPGPVV 163


>AB195785-1|BAE48238.1|  370|Homo sapiens regulatory factor X4
           isoform F protein.
          Length = 370

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLY 560
           ++ S P +H TPV    P + SA   ++ P VHS    +++ +Y
Sbjct: 294 LMSSTPRLHPTPVTPRWPEVPSANTCYTNPSVHSARYGNSSDMY 337


>AB195784-1|BAE48237.1|  390|Homo sapiens regulatory factor X4
           isoform E protein.
          Length = 390

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLY 560
           ++ S P +H TPV    P + SA   ++ P VHS    +++ +Y
Sbjct: 314 LMSSTPRLHPTPVTPRWPEVPSANTCYTNPSVHSARYGNSSDMY 357


>AB095366-1|BAE48232.1|  735|Homo sapiens regulatory factor X4,
           isoform d protein.
          Length = 735

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLY 560
           ++ S P +H TPV    P + SA   ++ P VHS    +++ +Y
Sbjct: 659 LMSSTPRLHPTPVTPRWPEVPSANTCYTNPSVHSARYGNSSDMY 702


>AB095365-1|BAE48231.1|  744|Homo sapiens regulatory factor X4,
           isoform c protein.
          Length = 744

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 429 VLHSAPVVHSTPVVHSAPLIHSAPVVHSAPLVHSGPVVHTASLY 560
           ++ S P +H TPV    P + SA   ++ P VHS    +++ +Y
Sbjct: 668 LMSSTPRLHPTPVTPRWPEVPSANTCYTNPSVHSARYGNSSDMY 711


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,883,016
Number of Sequences: 237096
Number of extensions: 1775182
Number of successful extensions: 10785
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 9875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10687
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -