Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120062.Seq
         (722 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X82835-1|CAA58042.1| 1977|Homo sapiens sodium channel alpha subu...    31   3.2  
DQ857292-1|ABI51981.1| 1977|Homo sapiens voltage-gated sodium ch...    31   3.2  

>X82835-1|CAA58042.1| 1977|Homo sapiens sodium channel alpha subunit
            protein.
          Length = 1977

 Score = 31.5 bits (68), Expect = 3.2
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = -3

Query: 387  YLEISQILIFRDC*IMLLYIFINSQNPNPNDSHSYSLIVFLRNIVFQVFNVF 232
            YL + Q+  F+   I ++Y  ++S N +    + YSL +++  +VF +F  F
Sbjct: 1385 YLSLLQVATFKGWTI-IMYAAVDSVNVDKQPKYEYSLYMYIYFVVFIIFGSF 1435


>DQ857292-1|ABI51981.1| 1977|Homo sapiens voltage-gated sodium channel
            Nav1.7 protein.
          Length = 1977

 Score = 31.5 bits (68), Expect = 3.2
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = -3

Query: 387  YLEISQILIFRDC*IMLLYIFINSQNPNPNDSHSYSLIVFLRNIVFQVFNVF 232
            YL + Q+  F+   I ++Y  ++S N +    + YSL +++  +VF +F  F
Sbjct: 1385 YLSLLQVATFKGWTI-IMYAAVDSVNVDKQPKYEYSLYMYIYFVVFIIFGSF 1435


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,106,454
Number of Sequences: 237096
Number of extensions: 1279885
Number of successful extensions: 1399
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)