Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_B03
(635 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC100827-1|AAI00828.1| 727|Homo sapiens synaptic vesicle glycop... 30 6.0
BC100826-1|AAI00827.1| 727|Homo sapiens synaptic vesicle glycop... 30 6.0
BC100825-1|AAI00826.1| 727|Homo sapiens synaptic vesicle glycop... 30 6.0
BC100824-1|AAI00825.1| 727|Homo sapiens synaptic vesicle glycop... 30 6.0
AB007890-1|BAA24860.3| 1506|Homo sapiens KIAA0430 protein protein. 30 6.0
EF452236-1|ABO40479.1| 1866|Homo sapiens NOD4 protein. 30 7.9
AK090439-1|BAC03420.1| 1056|Homo sapiens FLJ00359 protein protein. 30 7.9
AK074182-1|BAB85008.1| 733|Homo sapiens FLJ00255 protein protein. 30 7.9
AK025362-1|BAB15120.1| 1097|Homo sapiens protein ( Homo sapiens ... 30 7.9
AF389420-1|AAO59377.1| 1866|Homo sapiens NOD27 protein. 30 7.9
>BC100827-1|AAI00828.1| 727|Homo sapiens synaptic vesicle
glycoprotein 2C protein.
Length = 727
Score = 30.3 bits (65), Expect = 6.0
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 57 VSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANID 218
V +T + VD E ++ S FQD + DD+YY G+ Y+ EAN D
Sbjct: 22 VKKQTVKKVNQAVDRAQDEYTQRSYSRFQDEED---DDDYYPAGETYNGEANDD 72
>BC100826-1|AAI00827.1| 727|Homo sapiens synaptic vesicle
glycoprotein 2C protein.
Length = 727
Score = 30.3 bits (65), Expect = 6.0
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 57 VSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANID 218
V +T + VD E ++ S FQD + DD+YY G+ Y+ EAN D
Sbjct: 22 VKKQTVKKVNQAVDRAQDEYTQRSYSRFQDEED---DDDYYPAGETYNGEANDD 72
>BC100825-1|AAI00826.1| 727|Homo sapiens synaptic vesicle
glycoprotein 2C protein.
Length = 727
Score = 30.3 bits (65), Expect = 6.0
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 57 VSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANID 218
V +T + VD E ++ S FQD + DD+YY G+ Y+ EAN D
Sbjct: 22 VKKQTVKKVNQAVDRAQDEYTQRSYSRFQDEED---DDDYYPAGETYNGEANDD 72
>BC100824-1|AAI00825.1| 727|Homo sapiens synaptic vesicle
glycoprotein 2C protein.
Length = 727
Score = 30.3 bits (65), Expect = 6.0
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 57 VSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANID 218
V +T + VD E ++ S FQD + DD+YY G+ Y+ EAN D
Sbjct: 22 VKKQTVKKVNQAVDRAQDEYTQRSYSRFQDEED---DDDYYPAGETYNGEANDD 72
>AB007890-1|BAA24860.3| 1506|Homo sapiens KIAA0430 protein protein.
Length = 1506
Score = 30.3 bits (65), Expect = 6.0
Identities = 14/62 (22%), Positives = 28/62 (45%)
Frame = +3
Query: 288 YEFSIFYQKLREEAIALFHLFYYAKDFETFYKSAAFARVHLNEGQFLYAYYIAVIQRNDT 467
Y +F EE + L L+ +AK+ + + + ++ L+E Y Y+ + T
Sbjct: 1232 YLVEVFTNDKMEECVKLTSLYLFAKNVRSLLHTYHYQQIFLHEFSMAYTKYVGETLQPKT 1291
Query: 468 HG 473
+G
Sbjct: 1292 YG 1293
>EF452236-1|ABO40479.1| 1866|Homo sapiens NOD4 protein.
Length = 1866
Score = 29.9 bits (64), Expect = 7.9
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 2 YEDCPSSSGAHCPRA-IQCGVTENVSLQDKRC 94
++ CP HCP A + CG EN+S + ++C
Sbjct: 669 FDGCPLEP--HCPEALVGCGQIENLSFKSRKC 698
>AK090439-1|BAC03420.1| 1056|Homo sapiens FLJ00359 protein protein.
Length = 1056
Score = 29.9 bits (64), Expect = 7.9
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 2 YEDCPSSSGAHCPRA-IQCGVTENVSLQDKRC 94
++ CP HCP A + CG EN+S + ++C
Sbjct: 396 FDGCPLEP--HCPEALVGCGQIENLSFKSRKC 425
>AK074182-1|BAB85008.1| 733|Homo sapiens FLJ00255 protein protein.
Length = 733
Score = 29.9 bits (64), Expect = 7.9
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 2 YEDCPSSSGAHCPRA-IQCGVTENVSLQDKRC 94
++ CP HCP A + CG EN+S + ++C
Sbjct: 682 FDGCPLEP--HCPEALVGCGQIENLSFKSRKC 711
>AK025362-1|BAB15120.1| 1097|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21709 fis, clone COL10077. ).
Length = 1097
Score = 29.9 bits (64), Expect = 7.9
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 2 YEDCPSSSGAHCPRA-IQCGVTENVSLQDKRC 94
++ CP HCP A + CG EN+S + ++C
Sbjct: 354 FDGCPLEP--HCPEALVGCGQIENLSFKSRKC 383
>AF389420-1|AAO59377.1| 1866|Homo sapiens NOD27 protein.
Length = 1866
Score = 29.9 bits (64), Expect = 7.9
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 2 YEDCPSSSGAHCPRA-IQCGVTENVSLQDKRC 94
++ CP HCP A + CG EN+S + ++C
Sbjct: 669 FDGCPLEP--HCPEALVGCGQIENLSFKSRKC 698
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,430,161
Number of Sequences: 237096
Number of extensions: 1811872
Number of successful extensions: 3452
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3452
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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