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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A05_e33_01.seq
         (1560 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457024-1|CAG33305.1|  137|Homo sapiens RPL28 protein.                99   2e-20
BC011582-1|AAH11582.1|  137|Homo sapiens ribosomal protein L28 p...    99   2e-20
BC010182-1|AAH10182.1|  137|Homo sapiens ribosomal protein L28 p...    99   2e-20
BC010173-1|AAH10173.1|  137|Homo sapiens ribosomal protein L28 p...    99   2e-20
U14969-1|AAA85657.1|  137|Homo sapiens ribosomal protein L28 pro...    99   5e-20
AB209627-1|BAD92864.1|   95|Homo sapiens ribosomal protein L28 v...    53   3e-06
AB007179-1|BAA25838.1|   53|Homo sapiens ribosomal protein L28 p...    48   1e-04
X80031-1|CAA56335.1| 1670|Homo sapiens type IV collagen alpha 3 ...    31   8.6  
AJ288487-1|CAC36101.1| 1670|Homo sapiens alpha3 type IV collagen...    31   8.6  
AC097662-1|AAY24251.1| 1084|Homo sapiens unknown protein.              31   8.6  

>CR457024-1|CAG33305.1|  137|Homo sapiens RPL28 protein.
          Length = 137

 Score =   99 bits (238), Expect = 2e-20
 Identities = 46/100 (46%), Positives = 62/100 (62%)
 Frame = +2

Query: 107 FSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKA 286
           +S EPNN+   NS+RYNGLIH+K VGV    D KG  +V K+     KP  + +R     
Sbjct: 25  YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINK 84

Query: 287 GARRSLFKAKRLLKANHYRTDLTKATLRRASAILRSQRPI 406
            AR +L   + +++ N YR DL  A +RRASAILRSQ+P+
Sbjct: 85  NARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 124


>BC011582-1|AAH11582.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score =   99 bits (238), Expect = 2e-20
 Identities = 46/100 (46%), Positives = 62/100 (62%)
 Frame = +2

Query: 107 FSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKA 286
           +S EPNN+   NS+RYNGLIH+K VGV    D KG  +V K+     KP  + +R     
Sbjct: 25  YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINK 84

Query: 287 GARRSLFKAKRLLKANHYRTDLTKATLRRASAILRSQRPI 406
            AR +L   + +++ N YR DL  A +RRASAILRSQ+P+
Sbjct: 85  NARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 124


>BC010182-1|AAH10182.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score =   99 bits (238), Expect = 2e-20
 Identities = 46/100 (46%), Positives = 62/100 (62%)
 Frame = +2

Query: 107 FSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKA 286
           +S EPNN+   NS+RYNGLIH+K VGV    D KG  +V K+     KP  + +R     
Sbjct: 25  YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINR 84

Query: 287 GARRSLFKAKRLLKANHYRTDLTKATLRRASAILRSQRPI 406
            AR +L   + +++ N YR DL  A +RRASAILRSQ+P+
Sbjct: 85  NARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 124


>BC010173-1|AAH10173.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score =   99 bits (238), Expect = 2e-20
 Identities = 46/100 (46%), Positives = 62/100 (62%)
 Frame = +2

Query: 107 FSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKA 286
           +S EPNN+   NS+RYNGLIH+K VGV    D KG  +V K+     KP  + +R     
Sbjct: 25  YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINK 84

Query: 287 GARRSLFKAKRLLKANHYRTDLTKATLRRASAILRSQRPI 406
            AR +L   + +++ N YR DL  A +RRASAILRSQ+P+
Sbjct: 85  NARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 124


>U14969-1|AAA85657.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score = 98.7 bits (235), Expect = 5e-20
 Identities = 45/100 (45%), Positives = 62/100 (62%)
 Frame = +2

Query: 107 FSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKA 286
           +S EPNN+   NS+RYNGLIH+K VGV    D KG  +V K+     KP  + +R     
Sbjct: 25  YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINK 84

Query: 287 GARRSLFKAKRLLKANHYRTDLTKATLRRASAILRSQRPI 406
            AR +L   + +++ N YR DL  A +RRASAILR+Q+P+
Sbjct: 85  NARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRTQKPV 124


>AB209627-1|BAD92864.1|   95|Homo sapiens ribosomal protein L28
           variant protein.
          Length = 95

 Score = 52.8 bits (121), Expect = 3e-06
 Identities = 23/42 (54%), Positives = 29/42 (69%)
 Frame = +2

Query: 107 FSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKK 232
           +S EPNN+   NS+RYNGLIH+K VGV    D KG  +V K+
Sbjct: 33  YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKR 74


>AB007179-1|BAA25838.1|   53|Homo sapiens ribosomal protein L28
           protein.
          Length = 53

 Score = 47.6 bits (108), Expect = 1e-04
 Identities = 21/47 (44%), Positives = 30/47 (63%)
 Frame = +2

Query: 266 IRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILRSQRPI 406
           +R      AR +L   + +++ N YR DL  A +RRASAILRSQ+P+
Sbjct: 4   VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 50


>X80031-1|CAA56335.1| 1670|Homo sapiens type IV collagen alpha 3 chain
            protein.
          Length = 1670

 Score = 31.5 bits (68), Expect = 8.6
 Identities = 23/80 (28%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
 Frame = +2

Query: 968  FWGSXGPXSPXXEP----LKGXPPIXXLXGKAXXXGXXGREKAKGRPXGLEXXVTXPXXX 1135
            F G+ GP  P   P     +G P I  + G+    G  G +  KG P   E         
Sbjct: 896  FPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKG 955

Query: 1136 PPGXCXFRXVXGFXGNXAGP 1195
             PG   F    G  GN   P
Sbjct: 956  EPGLKGFAGNPGEKGNRGVP 975


>AJ288487-1|CAC36101.1| 1670|Homo sapiens alpha3 type IV collagen
            protein.
          Length = 1670

 Score = 31.5 bits (68), Expect = 8.6
 Identities = 23/80 (28%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
 Frame = +2

Query: 968  FWGSXGPXSPXXEP----LKGXPPIXXLXGKAXXXGXXGREKAKGRPXGLEXXVTXPXXX 1135
            F G+ GP  P   P     +G P I  + G+    G  G +  KG P   E         
Sbjct: 896  FPGAIGPPGPPGNPGRPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKG 955

Query: 1136 PPGXCXFRXVXGFXGNXAGP 1195
             PG   F    G  GN   P
Sbjct: 956  EPGLKGFAGNPGEKGNRGVP 975


>AC097662-1|AAY24251.1| 1084|Homo sapiens unknown protein.
          Length = 1084

 Score = 31.5 bits (68), Expect = 8.6
 Identities = 23/80 (28%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
 Frame = +2

Query: 968  FWGSXGPXSPXXEP----LKGXPPIXXLXGKAXXXGXXGREKAKGRPXGLEXXVTXPXXX 1135
            F G+ GP  P   P     +G P I  + G+    G  G +  KG P   E         
Sbjct: 310  FPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKG 369

Query: 1136 PPGXCXFRXVXGFXGNXAGP 1195
             PG   F    G  GN   P
Sbjct: 370  EPGLKGFAGNPGEKGNRGVP 389


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,736,630
Number of Sequences: 237096
Number of extensions: 3346559
Number of successful extensions: 8390
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8386
length of database: 76,859,062
effective HSP length: 94
effective length of database: 54,572,038
effective search space used: 23193116150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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