Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40024
         (708 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY095086-1|AAM11414.1|  330|Drosophila melanogaster RE56341p pro...    30   3.5  
AY075545-1|AAL68352.1|  384|Drosophila melanogaster RH43215p pro...    30   3.5  
AE014296-2391|AAF49733.1|  330|Drosophila melanogaster CG9238-PA...    30   3.5  
AE014296-2390|AAF49732.1|  384|Drosophila melanogaster CG9238-PB...    30   3.5  
BT001724-1|AAN71479.1|  568|Drosophila melanogaster RE69557p pro...    29   6.2  
AE014296-3637|AAF51793.2|  568|Drosophila melanogaster CG7442-PA...    29   6.2  
AF267746-1|AAF82099.1|  715|Drosophila melanogaster rad21 mitoti...    29   8.2  
AF186473-1|AAF01417.1|  715|Drosophila melanogaster mitotic cohe...    29   8.2  
AF132146-1|AAD33593.1|  715|Drosophila melanogaster DNA repair p...    29   8.2  
AF109926-1|AAD04175.1|  715|Drosophila melanogaster rad21 mitoti...    29   8.2  

>AY095086-1|AAM11414.1|  330|Drosophila melanogaster RE56341p
           protein.
          Length = 330

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 434 SCLERKSILHKARSTTA 484
           SCL RKS LHK+++TTA
Sbjct: 50  SCLSRKSCLHKSQNTTA 66


>AY075545-1|AAL68352.1|  384|Drosophila melanogaster RH43215p
           protein.
          Length = 384

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 434 SCLERKSILHKARSTTA 484
           SCL RKS LHK+++TTA
Sbjct: 104 SCLSRKSCLHKSQNTTA 120


>AE014296-2391|AAF49733.1|  330|Drosophila melanogaster CG9238-PA,
           isoform A protein.
          Length = 330

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 434 SCLERKSILHKARSTTA 484
           SCL RKS LHK+++TTA
Sbjct: 50  SCLSRKSCLHKSQNTTA 66


>AE014296-2390|AAF49732.1|  384|Drosophila melanogaster CG9238-PB,
           isoform B protein.
          Length = 384

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 434 SCLERKSILHKARSTTA 484
           SCL RKS LHK+++TTA
Sbjct: 104 SCLSRKSCLHKSQNTTA 120


>BT001724-1|AAN71479.1|  568|Drosophila melanogaster RE69557p
           protein.
          Length = 568

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 172 YRRFPWTLLSCSLVIVLNVLVYF 104
           ++ F W + +CSL  +++VLVY+
Sbjct: 357 FKNFKWRIANCSLCWIVHVLVYY 379


>AE014296-3637|AAF51793.2|  568|Drosophila melanogaster CG7442-PA
           protein.
          Length = 568

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 172 YRRFPWTLLSCSLVIVLNVLVYF 104
           ++ F W + +CSL  +++VLVY+
Sbjct: 357 FKNFKWRIANCSLCWIVHVLVYY 379


>AF267746-1|AAF82099.1|  715|Drosophila melanogaster rad21 mitotic
           cohesin protein.
          Length = 715

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = -1

Query: 429 LLWAQAMTQFPSRSPLLRVPNLMNHK*MDSFLQGLKDSLFSSLEH 295
           LL    M QF S + L   P  MNH+  D F QG  DS  + L+H
Sbjct: 514 LLSLNEMEQFSSINELPLTPRNMNHEMGDDFNQG--DSTPAGLDH 556


>AF186473-1|AAF01417.1|  715|Drosophila melanogaster mitotic cohesin
           SCC1 protein.
          Length = 715

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = -1

Query: 429 LLWAQAMTQFPSRSPLLRVPNLMNHK*MDSFLQGLKDSLFSSLEH 295
           LL    M QF S + L   P  MNH+  D F QG  DS  + L+H
Sbjct: 514 LLSLNEMEQFSSINELPLTPRNMNHEMGDDFNQG--DSTPAGLDH 556


>AF132146-1|AAD33593.1|  715|Drosophila melanogaster DNA repair
           protein Rad21 protein.
          Length = 715

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = -1

Query: 429 LLWAQAMTQFPSRSPLLRVPNLMNHK*MDSFLQGLKDSLFSSLEH 295
           LL    M QF S + L   P  MNH+  D F QG  DS  + L+H
Sbjct: 514 LLSLNEMEQFSSINELPLTPRNMNHEMGDDFNQG--DSTPAGLDH 556


>AF109926-1|AAD04175.1|  715|Drosophila melanogaster rad21 mitotic
           cohesin protein.
          Length = 715

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = -1

Query: 429 LLWAQAMTQFPSRSPLLRVPNLMNHK*MDSFLQGLKDSLFSSLEH 295
           LL    M QF S + L   P  MNH+  D F QG  DS  + L+H
Sbjct: 514 LLSLNEMEQFSSINELPLTPRNMNHEMGDDFNQG--DSTPAGLDH 556


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,288,602
Number of Sequences: 53049
Number of extensions: 403928
Number of successful extensions: 1161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3128965752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)