Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40003
(687 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me... 30 3.4
M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase... 30 3.4
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro... 30 3.4
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA... 30 3.4
AE014298-1331|AAF46494.1| 4547|Drosophila melanogaster CG12139-P... 29 4.5
X95845-1|CAA65103.1| 398|Drosophila melanogaster tap protein. 29 6.0
AY119146-1|AAM51006.1| 398|Drosophila melanogaster RE52048p pro... 29 6.0
AF022883-1|AAC80572.1| 398|Drosophila melanogaster basic helix-... 29 6.0
AE014296-2893|AAF49352.1| 398|Drosophila melanogaster CG7659-PA... 29 6.0
AE014297-1859|AAF55065.2| 492|Drosophila melanogaster CG3360-PA... 29 7.9
>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
D.melanogaster RpII215gene encoding RNA polymerase II,
largest subunit, completecds. ).
Length = 1896
Score = 29.9 bits (64), Expect = 3.4
Identities = 20/88 (22%), Positives = 34/88 (38%)
Frame = +3
Query: 258 FPWADDINPSVYQAGTDSSISENAYQLPQYYVGGRNDDPPSPVYQSPYGGGTWRSYSKAQ 437
FP + ++PS + + S P Y N P SP+Y SP T +++
Sbjct: 1571 FPASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQS 1630
Query: 438 KVHMQDAYCFPQCSSAFSLPLYNPNPMF 521
+ + + S P+Y+P F
Sbjct: 1631 TGYSPSSSGYSPTS-----PVYSPTVQF 1653
>M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase II
largest subunit protein.
Length = 408
Score = 29.9 bits (64), Expect = 3.4
Identities = 20/88 (22%), Positives = 34/88 (38%)
Frame = +3
Query: 258 FPWADDINPSVYQAGTDSSISENAYQLPQYYVGGRNDDPPSPVYQSPYGGGTWRSYSKAQ 437
FP + ++PS + + S P Y N P SP+Y SP T +++
Sbjct: 90 FPASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQS 149
Query: 438 KVHMQDAYCFPQCSSAFSLPLYNPNPMF 521
+ + + S P+Y+P F
Sbjct: 150 TGYSPSSSGYSPTS-----PVYSPTVQF 172
>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
Length = 1429
Score = 29.9 bits (64), Expect = 3.4
Identities = 20/88 (22%), Positives = 34/88 (38%)
Frame = +3
Query: 258 FPWADDINPSVYQAGTDSSISENAYQLPQYYVGGRNDDPPSPVYQSPYGGGTWRSYSKAQ 437
FP + ++PS + + S P Y N P SP+Y SP T +++
Sbjct: 1111 FPASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQS 1170
Query: 438 KVHMQDAYCFPQCSSAFSLPLYNPNPMF 521
+ + + S P+Y+P F
Sbjct: 1171 TGYSPSSSGYSPTS-----PVYSPTVQF 1193
>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
protein.
Length = 1887
Score = 29.9 bits (64), Expect = 3.4
Identities = 20/88 (22%), Positives = 34/88 (38%)
Frame = +3
Query: 258 FPWADDINPSVYQAGTDSSISENAYQLPQYYVGGRNDDPPSPVYQSPYGGGTWRSYSKAQ 437
FP + ++PS + + S P Y N P SP+Y SP T +++
Sbjct: 1569 FPASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQS 1628
Query: 438 KVHMQDAYCFPQCSSAFSLPLYNPNPMF 521
+ + + S P+Y+P F
Sbjct: 1629 TGYSPSSSGYSPTS-----PVYSPTVQF 1651
>AE014298-1331|AAF46494.1| 4547|Drosophila melanogaster CG12139-PB
protein.
Length = 4547
Score = 29.5 bits (63), Expect = 4.5
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 345 YYVGGRNDDPPS-PVYQSPYGGG 410
Y+V GR DD + +Y +PYGGG
Sbjct: 1692 YWVQGREDDDENCTIYTTPYGGG 1714
>X95845-1|CAA65103.1| 398|Drosophila melanogaster tap protein.
Length = 398
Score = 29.1 bits (62), Expect = 6.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 372 PPSPVYQSPYGGGTW 416
PP+P PY GGTW
Sbjct: 51 PPTPAIPQPYSGGTW 65
>AY119146-1|AAM51006.1| 398|Drosophila melanogaster RE52048p
protein.
Length = 398
Score = 29.1 bits (62), Expect = 6.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 372 PPSPVYQSPYGGGTW 416
PP+P PY GGTW
Sbjct: 51 PPTPAIPQPYSGGTW 65
>AF022883-1|AAC80572.1| 398|Drosophila melanogaster basic
helix-loop-helix neuraltranscription factor BIPAROUS
protein.
Length = 398
Score = 29.1 bits (62), Expect = 6.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 372 PPSPVYQSPYGGGTW 416
PP+P PY GGTW
Sbjct: 51 PPTPAIPQPYSGGTW 65
>AE014296-2893|AAF49352.1| 398|Drosophila melanogaster CG7659-PA
protein.
Length = 398
Score = 29.1 bits (62), Expect = 6.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 372 PPSPVYQSPYGGGTW 416
PP+P PY GGTW
Sbjct: 51 PPTPAIPQPYSGGTW 65
>AE014297-1859|AAF55065.2| 492|Drosophila melanogaster CG3360-PA
protein.
Length = 492
Score = 28.7 bits (61), Expect = 7.9
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 14 KYDEHI-DIKCIQSFELLITHGQNNIVLVLV 103
K+DEH + ++SFE LI+H NI++ LV
Sbjct: 190 KHDEHFKNGSLVESFESLISHSTLNILMPLV 220
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,050,744
Number of Sequences: 53049
Number of extensions: 726891
Number of successful extensions: 1961
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1957
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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