Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10397
(845 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF132144-1|AAD33591.1| 620|Drosophila melanogaster endo/exonucl... 124 2e-28
AE014134-2061|AAF53093.1| 620|Drosophila melanogaster CG16928-P... 124 2e-28
BT011336-1|AAR96128.1| 914|Drosophila melanogaster SD02170p pro... 30 4.6
BT001607-1|AAN71362.1| 604|Drosophila melanogaster RE31467p pro... 30 4.6
AE013599-3654|AAM68265.1| 904|Drosophila melanogaster CG5411-PB... 30 4.6
AE013599-3653|AAM68264.1| 805|Drosophila melanogaster CG5411-PD... 30 4.6
AE013599-3651|AAM68263.1| 914|Drosophila melanogaster CG5411-PA... 30 4.6
>AF132144-1|AAD33591.1| 620|Drosophila melanogaster
endo/exonuclease Mre11 protein.
Length = 620
Score = 124 bits (298), Expect = 2e-28
Identities = 63/108 (58%), Positives = 81/108 (75%), Gaps = 4/108 (3%)
Frame = +2
Query: 2 ELLSDQIKNF----SRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVN 169
E+LSDQ + F +++VNYEDPNLNI+ P+ SIHGNHDDP G G +SSLD+LS +GLVN
Sbjct: 94 EILSDQGQCFHNAVNQSVNYEDPNLNIAIPVFSIHGNHDDPSGFGRLSSLDLLSTSGLVN 153
Query: 170 YFGKWTDYTHVRISPVLLQKGLTRLALYDLAI*KIRDFHVFLLKKKWK 313
YFG+WTD T V ISPVL++KG ++LALY L+ I D + L K +K
Sbjct: 154 YFGRWTDLTQVEISPVLMRKGESQLALYGLS--HIHDGRLARLIKDFK 199
Score = 86.2 bits (204), Expect = 5e-17
Identities = 43/89 (48%), Positives = 55/89 (61%), Gaps = 12/89 (13%)
Frame = +1
Query: 256 LSHLKDQRLSRLFAEKKVEMERPD------------ETLDWFNLFVLHQNHADRGHSNYI 399
LSH+ D RL+RL + KV+ P+ E DWF+L V+HQN ADRG NY+
Sbjct: 183 LSHIHDGRLARLIKDFKVKFNCPENVANGEDGNESKEEEDWFHLLVVHQNRADRGPKNYL 242
Query: 400 PEGVLPNFLDLVVWGHEHDSHICPMKGNK 486
PE +LP+FL LV+WGHEHD I P + K
Sbjct: 243 PEDLLPSFLHLVIWGHEHDCRIEPEENAK 271
Score = 86.2 bits (204), Expect = 5e-17
Identities = 40/91 (43%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
Frame = +3
Query: 486 NRERQLFCVQPGSTVATSLAAGEALPKHCGLLEIHKGNFKLTPLPLQTVRPFIFKTIVLS 665
N +++ + QPGS+V TSL+ GEA KH GLLEI+KG FKL PLPL+TVRPF+++++VL+
Sbjct: 269 NAKKRFYVSQPGSSVPTSLSEGEAKKKHVGLLEIYKGKFKLKPLPLETVRPFVYESVVLA 328
Query: 666 E--ENIGSEDVNENEKVQEFLKTELMKLLMR 752
+ + +G + + + KV +F + + ++ R
Sbjct: 329 DHADELGLVEGDASTKVFKFAQERVEAMIER 359
>AE014134-2061|AAF53093.1| 620|Drosophila melanogaster CG16928-PA
protein.
Length = 620
Score = 124 bits (298), Expect = 2e-28
Identities = 63/108 (58%), Positives = 81/108 (75%), Gaps = 4/108 (3%)
Frame = +2
Query: 2 ELLSDQIKNF----SRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVN 169
E+LSDQ + F +++VNYEDPNLNI+ P+ SIHGNHDDP G G +SSLD+LS +GLVN
Sbjct: 94 EILSDQGQCFHNAVNQSVNYEDPNLNIAIPVFSIHGNHDDPSGFGRLSSLDLLSTSGLVN 153
Query: 170 YFGKWTDYTHVRISPVLLQKGLTRLALYDLAI*KIRDFHVFLLKKKWK 313
YFG+WTD T V ISPVL++KG ++LALY L+ I D + L K +K
Sbjct: 154 YFGRWTDLTQVEISPVLMRKGESQLALYGLS--HIHDGRLARLIKDFK 199
Score = 86.2 bits (204), Expect = 5e-17
Identities = 43/89 (48%), Positives = 55/89 (61%), Gaps = 12/89 (13%)
Frame = +1
Query: 256 LSHLKDQRLSRLFAEKKVEMERPD------------ETLDWFNLFVLHQNHADRGHSNYI 399
LSH+ D RL+RL + KV+ P+ E DWF+L V+HQN ADRG NY+
Sbjct: 183 LSHIHDGRLARLIKDFKVKFNCPENVANGEDGNESKEEEDWFHLLVVHQNRADRGPKNYL 242
Query: 400 PEGVLPNFLDLVVWGHEHDSHICPMKGNK 486
PE +LP+FL LV+WGHEHD I P + K
Sbjct: 243 PEDLLPSFLHLVIWGHEHDCRIEPEENAK 271
Score = 86.2 bits (204), Expect = 5e-17
Identities = 40/91 (43%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
Frame = +3
Query: 486 NRERQLFCVQPGSTVATSLAAGEALPKHCGLLEIHKGNFKLTPLPLQTVRPFIFKTIVLS 665
N +++ + QPGS+V TSL+ GEA KH GLLEI+KG FKL PLPL+TVRPF+++++VL+
Sbjct: 269 NAKKRFYVSQPGSSVPTSLSEGEAKKKHVGLLEIYKGKFKLKPLPLETVRPFVYESVVLA 328
Query: 666 E--ENIGSEDVNENEKVQEFLKTELMKLLMR 752
+ + +G + + + KV +F + + ++ R
Sbjct: 329 DHADELGLVEGDASTKVFKFAQERVEAMIER 359
>BT011336-1|AAR96128.1| 914|Drosophila melanogaster SD02170p
protein.
Length = 914
Score = 29.9 bits (64), Expect = 4.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 603 KLTPLPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKTE 731
KLT LPL+ I + +EN +++ +KV EFLK E
Sbjct: 466 KLTSLPLEAPITKIINLLSQVQENCSADEARLIDKVLEFLKRE 508
>BT001607-1|AAN71362.1| 604|Drosophila melanogaster RE31467p
protein.
Length = 604
Score = 29.9 bits (64), Expect = 4.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 603 KLTPLPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKTE 731
KLT LPL+ I + +EN +++ +KV EFLK E
Sbjct: 456 KLTSLPLEAPITKIINLLSQVQENCSADEARLIDKVLEFLKRE 498
>AE013599-3654|AAM68265.1| 904|Drosophila melanogaster CG5411-PB,
isoform B protein.
Length = 904
Score = 29.9 bits (64), Expect = 4.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 603 KLTPLPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKTE 731
KLT LPL+ I + +EN +++ +KV EFLK E
Sbjct: 456 KLTSLPLEAPITKIINLLSQVQENCSADEARLIDKVLEFLKRE 498
>AE013599-3653|AAM68264.1| 805|Drosophila melanogaster CG5411-PD,
isoform D protein.
Length = 805
Score = 29.9 bits (64), Expect = 4.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 603 KLTPLPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKTE 731
KLT LPL+ I + +EN +++ +KV EFLK E
Sbjct: 357 KLTSLPLEAPITKIINLLSQVQENCSADEARLIDKVLEFLKRE 399
>AE013599-3651|AAM68263.1| 914|Drosophila melanogaster CG5411-PA,
isoform A protein.
Length = 914
Score = 29.9 bits (64), Expect = 4.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 603 KLTPLPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKTE 731
KLT LPL+ I + +EN +++ +KV EFLK E
Sbjct: 466 KLTSLPLEAPITKIINLLSQVQENCSADEARLIDKVLEFLKRE 508
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,393,586
Number of Sequences: 53049
Number of extensions: 750930
Number of successful extensions: 1845
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1845
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4044853644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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