Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B12f
         (468 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y00831-1|CAA68761.1|   56|Drosophila melanogaster structural spe...    28   5.5  
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me...    28   5.5  
M19537-1|AAA28827.1|  408|Drosophila melanogaster RNA polymerase...    28   5.5  
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro...    28   5.5  
AM294198-1|CAL26102.1|   56|Drosophila melanogaster CG17956 prot...    28   5.5  
AM294197-1|CAL26101.1|   56|Drosophila melanogaster CG17956 prot...    28   5.5  
AM294196-1|CAL26100.1|   60|Drosophila melanogaster CG17956 prot...    28   5.5  
AM294195-1|CAL26099.1|   56|Drosophila melanogaster CG17956 prot...    28   5.5  
AM294194-1|CAL26098.1|   56|Drosophila melanogaster CG17956 prot...    28   5.5  
AM294193-1|CAL26097.1|   56|Drosophila melanogaster CG17956 prot...    28   5.5  
AM294192-1|CAL26096.1|   56|Drosophila melanogaster CG17956 prot...    28   5.5  
AM294191-1|CAL26095.1|   56|Drosophila melanogaster CG17956 prot...    28   5.5  
AM294190-1|CAL26094.1|   56|Drosophila melanogaster CG17956 prot...    28   5.5  
AM294189-1|CAL26093.1|   56|Drosophila melanogaster CG17956 prot...    28   5.5  
AM294188-1|CAL26092.1|   56|Drosophila melanogaster CG17956 prot...    28   5.5  
AM294187-1|CAL26091.1|   56|Drosophila melanogaster CG17956 prot...    28   5.5  
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA...    28   5.5  
AE014297-1766|AAF54994.1|   56|Drosophila melanogaster CG17956-P...    28   5.5  

>Y00831-1|CAA68761.1|   56|Drosophila melanogaster structural sperm
           protein protein.
          Length = 56

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 244 FGPRICRRIHTQS*WWGCYCSVPC 173
           +GP +C   +      GCYC  PC
Sbjct: 32  YGPNVCGPCYACGPCGGCYCGYPC 55


>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
            D.melanogaster RpII215gene encoding RNA polymerase II,
            largest subunit, completecds. ).
          Length = 1896

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 104  PNIHIRSCMTLTSN*KTPTYTSTTRNATITSP 199
            PN+ I S  +   +  +PTYT T RN + TSP
Sbjct: 1829 PNMSIYSPSSTKYSPTSPTYTPTARNYSPTSP 1860


>M19537-1|AAA28827.1|  408|Drosophila melanogaster RNA polymerase II
           largest subunit protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 104 PNIHIRSCMTLTSN*KTPTYTSTTRNATITSP 199
           PN+ I S  +   +  +PTYT T RN + TSP
Sbjct: 348 PNMSIYSPSSTKYSPTSPTYTPTARNYSPTSP 379


>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
          Length = 1429

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 104  PNIHIRSCMTLTSN*KTPTYTSTTRNATITSP 199
            PN+ I S  +   +  +PTYT T RN + TSP
Sbjct: 1369 PNMSIYSPSSTKYSPTSPTYTPTARNYSPTSP 1400


>AM294198-1|CAL26102.1|   56|Drosophila melanogaster CG17956
           protein.
          Length = 56

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 244 FGPRICRRIHTQS*WWGCYCSVPC 173
           +GP +C   +      GCYC  PC
Sbjct: 32  YGPNVCGPCYACGPCGGCYCGYPC 55


>AM294197-1|CAL26101.1|   56|Drosophila melanogaster CG17956
           protein.
          Length = 56

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 244 FGPRICRRIHTQS*WWGCYCSVPC 173
           +GP +C   +      GCYC  PC
Sbjct: 32  YGPNVCGPCYACGPCGGCYCGYPC 55


>AM294196-1|CAL26100.1|   60|Drosophila melanogaster CG17956
           protein.
          Length = 60

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 244 FGPRICRRIHTQS*WWGCYCSVPC 173
           +GP +C   +      GCYC  PC
Sbjct: 36  YGPNVCGPCYACGPCGGCYCGYPC 59


>AM294195-1|CAL26099.1|   56|Drosophila melanogaster CG17956
           protein.
          Length = 56

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 244 FGPRICRRIHTQS*WWGCYCSVPC 173
           +GP +C   +      GCYC  PC
Sbjct: 32  YGPNVCGPCYACGPCGGCYCGYPC 55


>AM294194-1|CAL26098.1|   56|Drosophila melanogaster CG17956
           protein.
          Length = 56

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 244 FGPRICRRIHTQS*WWGCYCSVPC 173
           +GP +C   +      GCYC  PC
Sbjct: 32  YGPNVCGPCYACGPCGGCYCGYPC 55


>AM294193-1|CAL26097.1|   56|Drosophila melanogaster CG17956
           protein.
          Length = 56

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 244 FGPRICRRIHTQS*WWGCYCSVPC 173
           +GP +C   +      GCYC  PC
Sbjct: 32  YGPNVCGPCYACGPCGGCYCGYPC 55


>AM294192-1|CAL26096.1|   56|Drosophila melanogaster CG17956
           protein.
          Length = 56

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 244 FGPRICRRIHTQS*WWGCYCSVPC 173
           +GP +C   +      GCYC  PC
Sbjct: 32  YGPNVCGPCYACGPCGGCYCGYPC 55


>AM294191-1|CAL26095.1|   56|Drosophila melanogaster CG17956
           protein.
          Length = 56

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 244 FGPRICRRIHTQS*WWGCYCSVPC 173
           +GP +C   +      GCYC  PC
Sbjct: 32  YGPNVCGPCYACGPCGGCYCGYPC 55


>AM294190-1|CAL26094.1|   56|Drosophila melanogaster CG17956
           protein.
          Length = 56

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 244 FGPRICRRIHTQS*WWGCYCSVPC 173
           +GP +C   +      GCYC  PC
Sbjct: 32  YGPNVCGPCYACGPCGGCYCGYPC 55


>AM294189-1|CAL26093.1|   56|Drosophila melanogaster CG17956
           protein.
          Length = 56

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 244 FGPRICRRIHTQS*WWGCYCSVPC 173
           +GP +C   +      GCYC  PC
Sbjct: 32  YGPNVCGPCYACGPCGGCYCGYPC 55


>AM294188-1|CAL26092.1|   56|Drosophila melanogaster CG17956
           protein.
          Length = 56

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 244 FGPRICRRIHTQS*WWGCYCSVPC 173
           +GP +C   +      GCYC  PC
Sbjct: 32  YGPNVCGPCYACGPCGGCYCGYPC 55


>AM294187-1|CAL26091.1|   56|Drosophila melanogaster CG17956
           protein.
          Length = 56

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 244 FGPRICRRIHTQS*WWGCYCSVPC 173
           +GP +C   +      GCYC  PC
Sbjct: 32  YGPNVCGPCYACGPCGGCYCGYPC 55


>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
            protein.
          Length = 1887

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 104  PNIHIRSCMTLTSN*KTPTYTSTTRNATITSP 199
            PN+ I S  +   +  +PTYT T RN + TSP
Sbjct: 1827 PNMSIYSPSSTKYSPTSPTYTPTARNYSPTSP 1858


>AE014297-1766|AAF54994.1|   56|Drosophila melanogaster CG17956-PA
           protein.
          Length = 56

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 244 FGPRICRRIHTQS*WWGCYCSVPC 173
           +GP +C   +      GCYC  PC
Sbjct: 32  YGPNVCGPCYACGPCGGCYCGYPC 55


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,741,183
Number of Sequences: 53049
Number of extensions: 459346
Number of successful extensions: 1615
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1614
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1580609772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)