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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0071.Seq
         (518 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U96491-1|AAB72148.1|  318|Drosophila melanogaster RACK1 protein.       94   9e-20
AY071661-1|AAL49283.1|  318|Drosophila melanogaster RE74715p pro...    94   9e-20
AE014134-1351|AAF52566.1|  318|Drosophila melanogaster CG7111-PA...    94   9e-20
AY089556-1|AAL90294.1|  819|Drosophila melanogaster LD44201p pro...    30   2.2  
AF223065-1|AAF34688.1|  823|Drosophila melanogaster putative mic...    30   2.2  
AE014298-2339|AAF48570.3|  819|Drosophila melanogaster CG13956-P...    30   2.2  
AE014298-2338|AAF48571.2|  819|Drosophila melanogaster CG13956-P...    30   2.2  
BT016079-1|AAV36964.1|  922|Drosophila melanogaster LD47749p pro...    29   3.8  
AY052114-1|AAK93538.1|  922|Drosophila melanogaster SD06427p pro...    29   3.8  
AE014297-1680|AAF54941.1|  922|Drosophila melanogaster CG9799-PA...    29   3.8  

>U96491-1|AAB72148.1|  318|Drosophila melanogaster RACK1 protein.
          Length = 318

 Score = 94.3 bits (224), Expect = 9e-20
 Identities = 54/113 (47%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
 Frame = -3

Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTLDRNXIITXLXLLXXQXLXX 337
           G  G+LNT T SPDGSLC SGGK  KA+ WDLNDG +L+TL+ N II  L     +    
Sbjct: 191 GHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLEHNDIINALCFSPNRYWLC 250

Query: 336 XCLRTFHQ--DLGSGKQXDG*RAQA*NH*QTXTSKTXPPQCLSLAWSTDGQTL 184
                  +  DL   K  +  R +      + TSK   PQCLSLAWSTDGQTL
Sbjct: 251 VAYGPSIKIWDLACKKTVEELRPEV----VSPTSKADQPQCLSLAWSTDGQTL 299



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 44/84 (52%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
 Frame = -1

Query: 371 ALXFSXXRXWXXXAXGPSIKIWDLXSKXMVEELRXEII---NKRXLPRQXLLSVSP*RGL 201
           AL FS  R W   A GPSIKIWDL  K  VEELR E++   +K   P+   L+ S     
Sbjct: 239 ALCFSPNRYWLCVAYGPSIKIWDLACKKTVEELRPEVVSPTSKADQPQCLSLAWSTDGQT 298

Query: 200 LMDKPYPAGYSDNTIRVWQVSISA 129
           L      AGYSDNTIRVWQVS+SA
Sbjct: 299 LF-----AGYSDNTIRVWQVSVSA 317


>AY071661-1|AAL49283.1|  318|Drosophila melanogaster RE74715p
           protein.
          Length = 318

 Score = 94.3 bits (224), Expect = 9e-20
 Identities = 54/113 (47%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
 Frame = -3

Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTLDRNXIITXLXLLXXQXLXX 337
           G  G+LNT T SPDGSLC SGGK  KA+ WDLNDG +L+TL+ N II  L     +    
Sbjct: 191 GHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLEHNDIINALCFSPNRYWLC 250

Query: 336 XCLRTFHQ--DLGSGKQXDG*RAQA*NH*QTXTSKTXPPQCLSLAWSTDGQTL 184
                  +  DL   K  +  R +      + TSK   PQCLSLAWSTDGQTL
Sbjct: 251 VAYGPSIKIWDLACKKTVEELRPEV----VSPTSKADQPQCLSLAWSTDGQTL 299



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 44/84 (52%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
 Frame = -1

Query: 371 ALXFSXXRXWXXXAXGPSIKIWDLXSKXMVEELRXEII---NKRXLPRQXLLSVSP*RGL 201
           AL FS  R W   A GPSIKIWDL  K  VEELR E++   +K   P+   L+ S     
Sbjct: 239 ALCFSPNRYWLCVAYGPSIKIWDLACKKTVEELRPEVVSPTSKADQPQCLSLAWSTDGQT 298

Query: 200 LMDKPYPAGYSDNTIRVWQVSISA 129
           L      AGYSDNTIRVWQVS+SA
Sbjct: 299 LF-----AGYSDNTIRVWQVSVSA 317


>AE014134-1351|AAF52566.1|  318|Drosophila melanogaster CG7111-PA
           protein.
          Length = 318

 Score = 94.3 bits (224), Expect = 9e-20
 Identities = 54/113 (47%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
 Frame = -3

Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDLNDGXHLHTLDRNXIITXLXLLXXQXLXX 337
           G  G+LNT T SPDGSLC SGGK  KA+ WDLNDG +L+TL+ N II  L     +    
Sbjct: 191 GHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLEHNDIINALCFSPNRYWLC 250

Query: 336 XCLRTFHQ--DLGSGKQXDG*RAQA*NH*QTXTSKTXPPQCLSLAWSTDGQTL 184
                  +  DL   K  +  R +      + TSK   PQCLSLAWSTDGQTL
Sbjct: 251 VAYGPSIKIWDLACKKTVEELRPEV----VSPTSKADQPQCLSLAWSTDGQTL 299



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 44/84 (52%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
 Frame = -1

Query: 371 ALXFSXXRXWXXXAXGPSIKIWDLXSKXMVEELRXEII---NKRXLPRQXLLSVSP*RGL 201
           AL FS  R W   A GPSIKIWDL  K  VEELR E++   +K   P+   L+ S     
Sbjct: 239 ALCFSPNRYWLCVAYGPSIKIWDLACKKTVEELRPEVVSPTSKADQPQCLSLAWSTDGQT 298

Query: 200 LMDKPYPAGYSDNTIRVWQVSISA 129
           L      AGYSDNTIRVWQVS+SA
Sbjct: 299 LF-----AGYSDNTIRVWQVSVSA 317


>AY089556-1|AAL90294.1|  819|Drosophila melanogaster LD44201p
           protein.
          Length = 819

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDL 421
           G + H+N+   SPDG   AS G     + WD+
Sbjct: 143 GHMSHVNSVKFSPDGLWIASAGLEGSILIWDI 174


>AF223065-1|AAF34688.1|  823|Drosophila melanogaster putative
           microtubule severingprotein katanin p80 subunit protein.
          Length = 823

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDL 421
           G + H+N+   SPDG   AS G     + WD+
Sbjct: 143 GHMSHVNSVKFSPDGLWIASAGLEGSILIWDI 174


>AE014298-2339|AAF48570.3|  819|Drosophila melanogaster CG13956-PB,
           isoform B protein.
          Length = 819

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDL 421
           G + H+N+   SPDG   AS G     + WD+
Sbjct: 143 GHMSHVNSVKFSPDGLWIASAGLEGSILIWDI 174


>AE014298-2338|AAF48571.2|  819|Drosophila melanogaster CG13956-PA,
           isoform A protein.
          Length = 819

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 516 GSLGHLNTXTXSPDGSLCASGGKYMKAMXWDL 421
           G + H+N+   SPDG   AS G     + WD+
Sbjct: 143 GHMSHVNSVKFSPDGLWIASAGLEGSILIWDI 174


>BT016079-1|AAV36964.1|  922|Drosophila melanogaster LD47749p
           protein.
          Length = 922

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 368 LXFSXXRXWXXXAXGPS-IKIWDLXSKXMVEELRXE 264
           L FS    W   A   S IK+WD+ S  MV+  R E
Sbjct: 589 LTFSPDSRWLITAAMDSTIKVWDIPSSYMVDHFRVE 624


>AY052114-1|AAK93538.1|  922|Drosophila melanogaster SD06427p
           protein.
          Length = 922

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 368 LXFSXXRXWXXXAXGPS-IKIWDLXSKXMVEELRXE 264
           L FS    W   A   S IK+WD+ S  MV+  R E
Sbjct: 589 LTFSPDSRWLITAAMDSTIKVWDIPSSYMVDHFRVE 624


>AE014297-1680|AAF54941.1|  922|Drosophila melanogaster CG9799-PA
           protein.
          Length = 922

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 368 LXFSXXRXWXXXAXGPS-IKIWDLXSKXMVEELRXE 264
           L FS    W   A   S IK+WD+ S  MV+  R E
Sbjct: 589 LTFSPDSRWLITAAMDSTIKVWDIPSSYMVDHFRVE 624


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,769,184
Number of Sequences: 53049
Number of extensions: 259058
Number of successful extensions: 781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1908489216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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