Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0023
         (585 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF187730-1|AAG17032.1|  159|Drosophila melanogaster eukaryotic t...   289   2e-78
AF159443-1|AAF80375.1|  159|Drosophila melanogaster eukaryotic i...   287   8e-78
AY071396-1|AAL49018.1|  159|Drosophila melanogaster RE47768p pro...   284   7e-77
AE013599-3794|AAM68297.1|  159|Drosophila melanogaster CG3186-PB...   284   7e-77
AE013599-3793|AAF47151.1|  159|Drosophila melanogaster CG3186-PA...   284   7e-77
AY121665-1|AAM51992.1|  709|Drosophila melanogaster RE10861p pro...    31   1.5  
AE014296-2303|AAF49800.1|  709|Drosophila melanogaster CG10710-P...    31   1.5  
M28863-1|AAA62770.1|  543|Drosophila melanogaster seven-up prote...    29   4.6  
AY129452-1|AAM76194.1|  543|Drosophila melanogaster RE08410p pro...    29   4.6  
AE014297-1474|AAN13541.1|  746|Drosophila melanogaster CG11502-P...    29   4.6  
AE014297-1473|AAF54773.1|  543|Drosophila melanogaster CG11502-P...    29   4.6  
U47618-2|AAA90970.1|  365|Drosophila melanogaster testis1 protein.     29   6.1  
AY113240-1|AAM29245.1|  365|Drosophila melanogaster AT11552p pro...    29   6.1  
AY058308-1|AAL13537.1|  828|Drosophila melanogaster GH07092p pro...    28   8.1  
AE014296-1712|AAF50221.1|  889|Drosophila melanogaster CG6761-PA...    28   8.1  

>AF187730-1|AAG17032.1|  159|Drosophila melanogaster eukaryotic
           translation initiationfactor 5a protein.
          Length = 159

 Score =  289 bits (708), Expect = 2e-78
 Identities = 131/160 (81%), Positives = 146/160 (91%)
 Frame = +3

Query: 39  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 218
           M +++D HFET DSGAS T+PMQCSALRKNGFVMLK RPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-HFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 219 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 398
           VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM D+GDLREDLK+P+G
Sbjct: 60  VGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTDSGDLREDLKVPEG 119

Query: 399 DLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKANTALDK 518
           +LG QLR DFDSGK+LLCTVLK+CGEECVIA+K NTALDK
Sbjct: 120 ELGEQLRLDFDSGKDLLCTVLKACGEECVIAIKTNTALDK 159


>AF159443-1|AAF80375.1|  159|Drosophila melanogaster eukaryotic
           initiation factor 5A protein.
          Length = 159

 Score =  287 bits (704), Expect = 8e-78
 Identities = 130/160 (81%), Positives = 146/160 (91%)
 Frame = +3

Query: 39  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 218
           M +++D HFET DSGAS T+PMQCSALRKNGFVMLK RPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-HFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 219 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 398
           VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK+P+G
Sbjct: 60  VGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEG 119

Query: 399 DLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKANTALDK 518
           +LG QLR DFDSGK+LLCTVLK+CGEECVIA+K NTALDK
Sbjct: 120 ELGEQLRLDFDSGKDLLCTVLKACGEECVIAIKTNTALDK 159


>AY071396-1|AAL49018.1|  159|Drosophila melanogaster RE47768p
           protein.
          Length = 159

 Score =  284 bits (696), Expect = 7e-77
 Identities = 129/160 (80%), Positives = 145/160 (90%)
 Frame = +3

Query: 39  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 218
           M +++D  FET DSGAS T+PMQCSALRKNGFVMLK RPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-QFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 219 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 398
           VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK+P+G
Sbjct: 60  VGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEG 119

Query: 399 DLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKANTALDK 518
           +LG QLR DFDSGK+LLCTVLK+CGEECVIA+K NTALDK
Sbjct: 120 ELGEQLRLDFDSGKDLLCTVLKACGEECVIAIKTNTALDK 159


>AE013599-3794|AAM68297.1|  159|Drosophila melanogaster CG3186-PB,
           isoform B protein.
          Length = 159

 Score =  284 bits (696), Expect = 7e-77
 Identities = 129/160 (80%), Positives = 145/160 (90%)
 Frame = +3

Query: 39  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 218
           M +++D  FET DSGAS T+PMQCSALRKNGFVMLK RPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-QFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 219 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 398
           VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK+P+G
Sbjct: 60  VGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEG 119

Query: 399 DLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKANTALDK 518
           +LG QLR DFDSGK+LLCTVLK+CGEECVIA+K NTALDK
Sbjct: 120 ELGEQLRLDFDSGKDLLCTVLKACGEECVIAIKTNTALDK 159


>AE013599-3793|AAF47151.1|  159|Drosophila melanogaster CG3186-PA,
           isoform A protein.
          Length = 159

 Score =  284 bits (696), Expect = 7e-77
 Identities = 129/160 (80%), Positives = 145/160 (90%)
 Frame = +3

Query: 39  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 218
           M +++D  FET DSGAS T+PMQCSALRKNGFVMLK RPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-QFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 219 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDG 398
           VGIDIF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK+P+G
Sbjct: 60  VGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEG 119

Query: 399 DLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKANTALDK 518
           +LG QLR DFDSGK+LLCTVLK+CGEECVIA+K NTALDK
Sbjct: 120 ELGEQLRLDFDSGKDLLCTVLKACGEECVIAIKTNTALDK 159


>AY121665-1|AAM51992.1|  709|Drosophila melanogaster RE10861p
           protein.
          Length = 709

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 190 PVLDVDIST-ILHGRPFSITKPFLRRAEHCMGKVAEAPESPVSKCVSSMSPI 38
           P    D+S  +LH  P S T   L  + + +   A AP SP S+C SS SP+
Sbjct: 552 PAPSTDLSPELLHISPESPTSTLLLPSSNHL-VAAVAPHSPASQCSSSQSPM 602


>AE014296-2303|AAF49800.1|  709|Drosophila melanogaster CG10710-PA
           protein.
          Length = 709

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 190 PVLDVDIST-ILHGRPFSITKPFLRRAEHCMGKVAEAPESPVSKCVSSMSPI 38
           P    D+S  +LH  P S T   L  + + +   A AP SP S+C SS SP+
Sbjct: 552 PAPSTDLSPELLHISPESPTSTLLLPSSNHL-VAAVAPHSPASQCSSSQSPM 602


>M28863-1|AAA62770.1|  543|Drosophila melanogaster seven-up protein
           type 1 protein.
          Length = 543

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 178 HPKPESTATLKFTWLGLISSMVKSMKISVPPHTTW 282
           +P+P+S A L    +GL     +SM + VPPH+ W
Sbjct: 13  NPRPQSGAELSAFDIGLS----RSMGLGVPPHSAW 43


>AY129452-1|AAM76194.1|  543|Drosophila melanogaster RE08410p
           protein.
          Length = 543

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 178 HPKPESTATLKFTWLGLISSMVKSMKISVPPHTTW 282
           +P+P+S A L    +GL     +SM + VPPH+ W
Sbjct: 13  NPRPQSGAELSAFDIGLS----RSMGLGVPPHSAW 43


>AE014297-1474|AAN13541.1|  746|Drosophila melanogaster CG11502-PA,
           isoform A protein.
          Length = 746

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 178 HPKPESTATLKFTWLGLISSMVKSMKISVPPHTTW 282
           +P+P+S A L    +GL     +SM + VPPH+ W
Sbjct: 13  NPRPQSGAELSAFDIGLS----RSMGLGVPPHSAW 43


>AE014297-1473|AAF54773.1|  543|Drosophila melanogaster CG11502-PB,
           isoform B protein.
          Length = 543

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 178 HPKPESTATLKFTWLGLISSMVKSMKISVPPHTTW 282
           +P+P+S A L    +GL     +SM + VPPH+ W
Sbjct: 13  NPRPQSGAELSAFDIGLS----RSMGLGVPPHSAW 43


>U47618-2|AAA90970.1|  365|Drosophila melanogaster testis1 protein.
          Length = 365

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
 Frame = +1

Query: 28  KTQQWVTSKTHTLRPETPGPQPPSPCNVRPCVKM---VSLC*RVVHARLLKCPHPKPEST 198
           K+Q   T +T  + P  P  Q P P   +PC        LC +V +      PH +P   
Sbjct: 265 KSQPTCTDQT-LIVPMQPQVQSPVPPQEQPCTSRHIRFDLCTQVNNFE----PHVEPHFY 319

Query: 199 ATLKFTWLGLISSMVKSMKISVPPHTTWTYL 291
            T+         + V   K SVP HT WT L
Sbjct: 320 RTIPLGQNPYPRAQVS--KPSVPKHTGWTNL 348


>AY113240-1|AAM29245.1|  365|Drosophila melanogaster AT11552p
           protein.
          Length = 365

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
 Frame = +1

Query: 28  KTQQWVTSKTHTLRPETPGPQPPSPCNVRPCVKM---VSLC*RVVHARLLKCPHPKPEST 198
           K+Q   T +T  + P  P  Q P P   +PC        LC +V +      PH +P   
Sbjct: 265 KSQPTCTDQT-LIVPMQPQVQSPVPPQEQPCTSRHIRFDLCTQVNNFE----PHVEPHFY 319

Query: 199 ATLKFTWLGLISSMVKSMKISVPPHTTWTYL 291
            T+         + V   K SVP HT WT L
Sbjct: 320 RTIPLGQNPYPRAQVS--KPSVPKHTGWTNL 348


>AY058308-1|AAL13537.1|  828|Drosophila melanogaster GH07092p
           protein.
          Length = 828

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 189 RFWMWTFQQSCMDDPSA*RNHFYA 118
           R W    Q  C  DP A R HFY+
Sbjct: 401 RLWTKLIQSLCEPDPEALRGHFYS 424


>AE014296-1712|AAF50221.1|  889|Drosophila melanogaster CG6761-PA
           protein.
          Length = 889

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 189 RFWMWTFQQSCMDDPSA*RNHFYA 118
           R W    Q  C  DP A R HFY+
Sbjct: 462 RLWTKLIQSLCEPDPEALRGHFYS 485


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,954,466
Number of Sequences: 53049
Number of extensions: 648996
Number of successful extensions: 2460
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2457
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2338128087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)