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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0006
         (385 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ398892-1|ABD61608.1| 2043|Drosophila melanogaster Dicer-1 prot...    28   3.6  
DQ398891-1|ABD61607.1| 2043|Drosophila melanogaster Dicer-1 prot...    28   3.6  
DQ398890-1|ABD61606.1| 2043|Drosophila melanogaster Dicer-1 prot...    28   3.6  
DQ398889-1|ABD61605.1| 2043|Drosophila melanogaster Dicer-1 prot...    28   3.6  
DQ398888-1|ABD61604.1| 2043|Drosophila melanogaster Dicer-1 prot...    28   3.6  
DQ398887-1|ABD61603.1| 2043|Drosophila melanogaster Dicer-1 prot...    28   3.6  
DQ398886-1|ABD61602.1| 2043|Drosophila melanogaster Dicer-1 prot...    28   3.6  
DQ398885-1|ABD61601.1| 2043|Drosophila melanogaster Dicer-1 prot...    28   3.6  
AE014297-3226|AAF56056.1| 2249|Drosophila melanogaster CG4792-PA...    28   3.6  
BT021212-1|AAX33360.1|  758|Drosophila melanogaster SD03462p pro...    27   6.3  
AJ289232-1|CAC81969.1|  758|Drosophila melanogaster matrix metal...    27   6.3  
AE013599-907|AAF58911.5| 1136|Drosophila melanogaster CG1794-PA,...    27   6.3  
AE013599-906|AAS64885.1|  758|Drosophila melanogaster CG1794-PB,...    27   6.3  

>DQ398892-1|ABD61608.1| 2043|Drosophila melanogaster Dicer-1 protein.
          Length = 2043

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -2

Query: 222  QVSPLIQQTSRSRDEDEPGLLSYSLYIFQPCFFGFICVSIVACQPCFFGFICVSIVCSV 46
            ++ P  +Q  +  DE  PG      Y ++     F     VA  PC+  FI +++ C +
Sbjct: 872  ELEPEDEQIVQLSDEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPI 930


>DQ398891-1|ABD61607.1| 2043|Drosophila melanogaster Dicer-1 protein.
          Length = 2043

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -2

Query: 222  QVSPLIQQTSRSRDEDEPGLLSYSLYIFQPCFFGFICVSIVACQPCFFGFICVSIVCSV 46
            ++ P  +Q  +  DE  PG      Y ++     F     VA  PC+  FI +++ C +
Sbjct: 872  ELEPEDEQIVQLSDEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPI 930


>DQ398890-1|ABD61606.1| 2043|Drosophila melanogaster Dicer-1 protein.
          Length = 2043

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -2

Query: 222  QVSPLIQQTSRSRDEDEPGLLSYSLYIFQPCFFGFICVSIVACQPCFFGFICVSIVCSV 46
            ++ P  +Q  +  DE  PG      Y ++     F     VA  PC+  FI +++ C +
Sbjct: 872  ELEPEDEQIVQLSDEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPI 930


>DQ398889-1|ABD61605.1| 2043|Drosophila melanogaster Dicer-1 protein.
          Length = 2043

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -2

Query: 222  QVSPLIQQTSRSRDEDEPGLLSYSLYIFQPCFFGFICVSIVACQPCFFGFICVSIVCSV 46
            ++ P  +Q  +  DE  PG      Y ++     F     VA  PC+  FI +++ C +
Sbjct: 872  ELEPEDEQIVQLSDEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPI 930


>DQ398888-1|ABD61604.1| 2043|Drosophila melanogaster Dicer-1 protein.
          Length = 2043

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -2

Query: 222  QVSPLIQQTSRSRDEDEPGLLSYSLYIFQPCFFGFICVSIVACQPCFFGFICVSIVCSV 46
            ++ P  +Q  +  DE  PG      Y ++     F     VA  PC+  FI +++ C +
Sbjct: 872  ELEPEDEQIVQLSDEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPI 930


>DQ398887-1|ABD61603.1| 2043|Drosophila melanogaster Dicer-1 protein.
          Length = 2043

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -2

Query: 222  QVSPLIQQTSRSRDEDEPGLLSYSLYIFQPCFFGFICVSIVACQPCFFGFICVSIVCSV 46
            ++ P  +Q  +  DE  PG      Y ++     F     VA  PC+  FI +++ C +
Sbjct: 872  ELEPEDEQIVQLSDEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPI 930


>DQ398886-1|ABD61602.1| 2043|Drosophila melanogaster Dicer-1 protein.
          Length = 2043

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -2

Query: 222  QVSPLIQQTSRSRDEDEPGLLSYSLYIFQPCFFGFICVSIVACQPCFFGFICVSIVCSV 46
            ++ P  +Q  +  DE  PG      Y ++     F     VA  PC+  FI +++ C +
Sbjct: 872  ELEPEDEQIVQLSDEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPI 930


>DQ398885-1|ABD61601.1| 2043|Drosophila melanogaster Dicer-1 protein.
          Length = 2043

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -2

Query: 222  QVSPLIQQTSRSRDEDEPGLLSYSLYIFQPCFFGFICVSIVACQPCFFGFICVSIVCSV 46
            ++ P  +Q  +  DE  PG      Y ++     F     VA  PC+  FI +++ C +
Sbjct: 872  ELEPEDEQIVQLSDEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPI 930


>AE014297-3226|AAF56056.1| 2249|Drosophila melanogaster CG4792-PA
            protein.
          Length = 2249

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -2

Query: 222  QVSPLIQQTSRSRDEDEPGLLSYSLYIFQPCFFGFICVSIVACQPCFFGFICVSIVCSV 46
            ++ P  +Q  +  DE  PG      Y ++     F     VA  PC+  FI +++ C +
Sbjct: 929  ELEPEDEQIVQLSDEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPI 987


>BT021212-1|AAX33360.1|  758|Drosophila melanogaster SD03462p
           protein.
          Length = 758

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 212 HSSSKHHVVGMRTNPVSCLTHYTFFSHVSLVLFVYQ 105
           H    HH    +  P SC+T+Y   S +   LF+++
Sbjct: 499 HRQHHHHNKPRKPKPDSCMTYYDAISIIRGELFIFR 534


>AJ289232-1|CAC81969.1|  758|Drosophila melanogaster matrix
           metalloproteinase 2-MMP protein.
          Length = 758

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 212 HSSSKHHVVGMRTNPVSCLTHYTFFSHVSLVLFVYQ 105
           H    HH    +  P SC+T+Y   S +   LF+++
Sbjct: 499 HRQHHHHNKPRKPKPDSCMTYYDAISIIRGELFIFR 534


>AE013599-907|AAF58911.5| 1136|Drosophila melanogaster CG1794-PA,
           isoform A protein.
          Length = 1136

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 212 HSSSKHHVVGMRTNPVSCLTHYTFFSHVSLVLFVYQ 105
           H    HH    +  P SC+T+Y   S +   LF+++
Sbjct: 877 HRQHHHHNKPRKPKPDSCMTYYDAISIIRGELFIFR 912


>AE013599-906|AAS64885.1|  758|Drosophila melanogaster CG1794-PB,
           isoform B protein.
          Length = 758

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 212 HSSSKHHVVGMRTNPVSCLTHYTFFSHVSLVLFVYQ 105
           H    HH    +  P SC+T+Y   S +   LF+++
Sbjct: 499 HRQHHHHNKPRKPKPDSCMTYYDAISIIRGELFIFR 534


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,232,475
Number of Sequences: 53049
Number of extensions: 263991
Number of successful extensions: 501
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1045179750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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