SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40031
         (487 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    28   3.1  
AF078781-4|AAC26918.1|  255|Caenorhabditis elegans Hypothetical ...    28   3.1  
AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase...    28   4.1  
AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase...    28   4.1  
AF068714-7|AAT68905.1|  592|Caenorhabditis elegans Egg laying de...    28   4.1  
AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying de...    28   4.1  
AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying de...    28   4.1  
Z68882-11|CAA93104.1|  520|Caenorhabditis elegans Hypothetical p...    27   7.2  
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AB040993-1|BAB21561.1|  520|Caenorhabditis elegans CeCRMP/DHP-2 ...    27   7.2  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U00034-2|AAM15548.1|  378|Caenorhabditis elegans Pim (mammalian ...    27   9.5  
U00034-1|AAA50639.2|  566|Caenorhabditis elegans Pim (mammalian ...    27   9.5  

>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 218  LSIFTGTYYFYRVFTQAVFIQTLLNQDFQFFSHLRGETD 102
            + IF  T+ FY+  +  +F++ LL   +QF   ++ ++D
Sbjct: 2609 IDIFDKTHLFYQNGSSLIFLKPLLPGTYQFSLQIKSQSD 2647


>AF078781-4|AAC26918.1|  255|Caenorhabditis elegans Hypothetical
           protein B0545.4 protein.
          Length = 255

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 177 EDAIEVIRAGEYREDEPFQNLVYCAYRNSERSMKIIESSVKLQ 305
           ++ +E IRA E  +DEP+ N V   Y +   S ++ E   K+Q
Sbjct: 68  DEVLEFIRAVEKEDDEPYSN-VDSEYDDFGDSSEVTEPVAKIQ 109


>AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase C
           beta protein.
          Length = 1418

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 129 KLKVLIQECLNENGLGEDAIEVIRAGEYREDEPFQNLVYCA 251
           K + ++Q+CLN+ GLG D     R       + F+N   C+
Sbjct: 174 KPEKMVQKCLNDLGLGGDKYTPARVINRSMGKKFRNFYKCS 214


>AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase C
           beta homolog EGL-8 protein.
          Length = 1431

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 129 KLKVLIQECLNENGLGEDAIEVIRAGEYREDEPFQNLVYCA 251
           K + ++Q+CLN+ GLG D     R       + F+N   C+
Sbjct: 176 KPEKMVQKCLNDLGLGGDKYTPARVINRSMGKKFRNFYKCS 216


>AF068714-7|AAT68905.1|  592|Caenorhabditis elegans Egg laying
           defective protein 8,isoform c protein.
          Length = 592

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 129 KLKVLIQECLNENGLGEDAIEVIRAGEYREDEPFQNLVYCA 251
           K + ++Q+CLN+ GLG D     R       + F+N   C+
Sbjct: 176 KPEKMVQKCLNDLGLGGDKYTPARVINRSMGKKFRNFYKCS 216


>AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying
           defective protein 8,isoform a protein.
          Length = 1419

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 129 KLKVLIQECLNENGLGEDAIEVIRAGEYREDEPFQNLVYCA 251
           K + ++Q+CLN+ GLG D     R       + F+N   C+
Sbjct: 176 KPEKMVQKCLNDLGLGGDKYTPARVINRSMGKKFRNFYKCS 216


>AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying
           defective protein 8,isoform b protein.
          Length = 1431

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 129 KLKVLIQECLNENGLGEDAIEVIRAGEYREDEPFQNLVYCA 251
           K + ++Q+CLN+ GLG D     R       + F+N   C+
Sbjct: 176 KPEKMVQKCLNDLGLGGDKYTPARVINRSMGKKFRNFYKCS 216


>Z68882-11|CAA93104.1|  520|Caenorhabditis elegans Hypothetical
           protein C47E12.8 protein.
          Length = 520

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +3

Query: 90  SRKLVSFAPEVAKKLKVLIQECLNENGLGEDAIEVIRAGEY--REDEPFQNLVYCA 251
           S  + S+ PE+AK+++++      E G+      +  AG +  R++E +Q ++ CA
Sbjct: 124 SMAITSWGPEIAKEMEIVTGA---EYGINSFKFFLAYAGVFMVRDEEFYQGMIQCA 176


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
            M03A8.2 protein.
          Length = 2275

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
 Frame = +3

Query: 117  EVAKKLKVLIQECLNEN------GLGEDAIEVIRAGEYRED--EPFQNLVYCAYRN 260
            +V K+++ +IQE +NEN       +GEDA+      + + D  E  ++  + A RN
Sbjct: 1346 DVEKRIQAMIQEAVNENDERDGIAIGEDAVREFATIQPKHDANETNESFEHVASRN 1401


>AB040993-1|BAB21561.1|  520|Caenorhabditis elegans CeCRMP/DHP-2
           protein.
          Length = 520

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +3

Query: 90  SRKLVSFAPEVAKKLKVLIQECLNENGLGEDAIEVIRAGEY--REDEPFQNLVYCA 251
           S  + S+ PE+AK+++++      E G+      +  AG +  R++E +Q ++ CA
Sbjct: 124 SMAITSWGPEIAKEMEIVTGA---EYGINSFKFFLAYAGVFMVRDEEFYQGMIQCA 176


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical protein
            C27B7.4 protein.
          Length = 1274

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 189  LSRLHPSRFHSNTPESGLSIF*PPP 115
            LS L  S F++N P S + +  PPP
Sbjct: 1035 LSGLSSSNFYNNAPGSSMGMMGPPP 1059


>U00034-2|AAM15548.1|  378|Caenorhabditis elegans Pim (mammalian
           oncogene) relatedkinase protein 1, isoform c protein.
          Length = 378

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 102 VSFAPEVAKKLKVLIQECLNENGLGEDAIEVIRAGEYRE-DEPF 230
           V F P+++K++  L++ CL  +     ++  I A  + E D+PF
Sbjct: 249 VKFPPDLSKEVCQLVKSCLTTSTSARASLAQIAAHPWMETDKPF 292


>U00034-1|AAA50639.2|  566|Caenorhabditis elegans Pim (mammalian
           oncogene) relatedkinase protein 1, isoform a protein.
          Length = 566

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 102 VSFAPEVAKKLKVLIQECLNENGLGEDAIEVIRAGEYRE-DEPF 230
           V F P+++K++  L++ CL  +     ++  I A  + E D+PF
Sbjct: 249 VKFPPDLSKEVCQLVKSCLTTSTSARASLAQIAAHPWMETDKPF 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,027,807
Number of Sequences: 27780
Number of extensions: 230025
Number of successful extensions: 602
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -