Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40015
         (826 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81127-2|CAB03387.1|  137|Caenorhabditis elegans Hypothetical pr...    83   3e-16
AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding...    80   2e-15
Z81127-7|CAB03391.2|  137|Caenorhabditis elegans Hypothetical pr...    75   8e-14
AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding...    73   2e-13
AC024771-9|ABA61863.1|  137|Caenorhabditis elegans Lipid binding...    61   8e-10
AC024771-8|AAK70656.1|  152|Caenorhabditis elegans Lipid binding...    61   8e-10
U64855-7|AAB04984.1|  145|Caenorhabditis elegans Lipid binding p...    40   0.002
U28991-8|AAM22060.1|  517|Caenorhabditis elegans Hypothetical pr...    33   0.25 
U28991-7|AAK68312.1|  626|Caenorhabditis elegans Hypothetical pr...    33   0.25 
U28991-6|AAK68313.1|  624|Caenorhabditis elegans Hypothetical pr...    33   0.25 
U40420-6|ABD63223.1|  150|Caenorhabditis elegans Lipid binding p...    32   0.43 
U40420-5|AAA81433.2|  165|Caenorhabditis elegans Lipid binding p...    32   0.43 
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    30   1.7  
U40420-8|AAA81435.1|  161|Caenorhabditis elegans Lipid binding p...    29   5.3  
U40420-7|AAA81434.1|  159|Caenorhabditis elegans Lipid binding p...    29   5.3  

>Z81127-2|CAB03387.1|  137|Caenorhabditis elegans Hypothetical
           protein T22G5.2 protein.
          Length = 137

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 38/69 (55%), Positives = 52/69 (75%)
 Frame = +1

Query: 46  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 225
           +F+G+ +K+  +ENFDE+MK IGVGLITRKAA  + P +E+R DG+ +N    STFK T+
Sbjct: 6   DFIGR-WKLVQTENFDEYMKEIGVGLITRKAAAHLKPILEIRLDGETWNFDQFSTFKNTK 64

Query: 226 MKFKPGEEF 252
           + FK GEEF
Sbjct: 65  LSFKLGEEF 73


>AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding
           protein protein 6 protein.
          Length = 135

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 38/75 (50%), Positives = 54/75 (72%)
 Frame = +1

Query: 37  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFK 216
           +  EFVG+ +K+  SENF+E+MK +GVGLITRKAA  + PT+E++ +GD +     STFK
Sbjct: 1   MSQEFVGR-WKLIHSENFEEYMKEVGVGLITRKAAANLKPTLEIKVEGDLWYSNQYSTFK 59

Query: 217 TTEMKFKPGEEFERT 261
            T + FK G+EF+ T
Sbjct: 60  NTTLSFKLGQEFDET 74


>Z81127-7|CAB03391.2|  137|Caenorhabditis elegans Hypothetical
           protein T22G5.6 protein.
          Length = 137

 Score = 74.5 bits (175), Expect = 8e-14
 Identities = 34/73 (46%), Positives = 52/73 (71%)
 Frame = +1

Query: 46  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 225
           EF+G+ +K+  SENF+E++K IGVGL+ RKAA+  +PT+E++ DGD ++    STFK  +
Sbjct: 6   EFIGR-WKLVHSENFEEYLKEIGVGLLIRKAASLTSPTLEIKLDGDTWHFNQYSTFKNNK 64

Query: 226 MKFKPGEEFERTA 264
           + FK  E+F   A
Sbjct: 65  LAFKIREKFVEIA 77


>AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding
           protein protein 5 protein.
          Length = 136

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 32/72 (44%), Positives = 54/72 (75%)
 Frame = +1

Query: 46  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 225
           +FVG+ +K+  SENF++++K +GVGL+ RKAA A  PT+E++ +G+++++   STFK T 
Sbjct: 5   QFVGR-WKLVESENFEDYLKEVGVGLLLRKAACAAKPTLEIKVNGNKWHVNQLSTFKNTT 63

Query: 226 MKFKPGEEFERT 261
           ++F  G EF+ T
Sbjct: 64  LEFTLGVEFDET 75


>AC024771-9|ABA61863.1|  137|Caenorhabditis elegans Lipid binding
           protein protein 9,isoform b protein.
          Length = 137

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
 Frame = +1

Query: 37  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFK 216
           I+ + VGK +   SSENFDE++K +GVG   R  A    P +E   +GDE+ + ++STFK
Sbjct: 3   IQTDLVGK-WNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFK 61

Query: 217 TTEMKFKPG-EEFERTA 264
              +K+K G    E+TA
Sbjct: 62  NYTLKWKLGTASDEKTA 78



 Score = 32.7 bits (71), Expect = 0.33
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 255 EDRADGAKVKSVCTFEGNTLKQVQKAPDGIEVTYVREFGPE-EMKAVMTAKDVTCTRVYK 431
           E  ADG  V SV + E + L Q++    G + + +  +    ++  V T   V CTRVY+
Sbjct: 75  EKTADGRDVSSVFSIENDHLVQIETGKGGGKDSRIERYIENGKLVIVCTCNGVKCTRVYE 134


>AC024771-8|AAK70656.1|  152|Caenorhabditis elegans Lipid binding
           protein protein 9,isoform a protein.
          Length = 152

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
 Frame = +1

Query: 37  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFK 216
           I+ + VGK +   SSENFDE++K +GVG   R  A    P +E   +GDE+ + ++STFK
Sbjct: 18  IQTDLVGK-WNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFK 76

Query: 217 TTEMKFKPG-EEFERTA 264
              +K+K G    E+TA
Sbjct: 77  NYTLKWKLGTASDEKTA 93



 Score = 32.7 bits (71), Expect = 0.33
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 255 EDRADGAKVKSVCTFEGNTLKQVQKAPDGIEVTYVREFGPE-EMKAVMTAKDVTCTRVYK 431
           E  ADG  V SV + E + L Q++    G + + +  +    ++  V T   V CTRVY+
Sbjct: 90  EKTADGRDVSSVFSIENDHLVQIETGKGGGKDSRIERYIENGKLVIVCTCNGVKCTRVYE 149


>U64855-7|AAB04984.1|  145|Caenorhabditis elegans Lipid binding
           protein protein 4 protein.
          Length = 145

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
 Frame = +1

Query: 34  SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAAN--AVTPTVELRKDGDEYNLVTSS 207
           S+  +F G+ Y++  SENFDEF+ + GV    R+      +T  +   ++  +YN+   +
Sbjct: 2   SVPDKFFGR-YQLDKSENFDEFLSSKGVNWFVRQMIKLAGLTKIISQNQEAGKYNMENLT 60

Query: 208 TFKTTEMK-FKPGEEFERTAL 267
           + K T  + ++ G++FE   L
Sbjct: 61  SKKNTNYQAWELGKKFEAPGL 81


>U28991-8|AAM22060.1|  517|Caenorhabditis elegans Hypothetical
           protein F08F8.9c protein.
          Length = 517

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = +1

Query: 76  SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKP 240
           SSE  ++ +  IGV L  RK  +A  P      DG+    V +ST K  E K KP
Sbjct: 2   SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKP 56


>U28991-7|AAK68312.1|  626|Caenorhabditis elegans Hypothetical
           protein F08F8.9a protein.
          Length = 626

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = +1

Query: 76  SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKP 240
           SSE  ++ +  IGV L  RK  +A  P      DG+    V +ST K  E K KP
Sbjct: 2   SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKP 56


>U28991-6|AAK68313.1|  624|Caenorhabditis elegans Hypothetical
           protein F08F8.9b protein.
          Length = 624

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = +1

Query: 76  SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKP 240
           SSE  ++ +  IGV L  RK  +A  P      DG+    V +ST K  E K KP
Sbjct: 2   SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKP 56


>U40420-6|ABD63223.1|  150|Caenorhabditis elegans Lipid binding
           protein protein 3,isoform b protein.
          Length = 150

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +1

Query: 37  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKD--GDEYNLVTSST 210
           I  +F GK Y +  SENFDEF+   GV    R+       +  L K+    +YN+   ++
Sbjct: 8   IPEKFFGK-YDLDRSENFDEFLAAKGVSWFVRQMIKLAKVSKVLAKNETPGKYNMENLTS 66

Query: 211 FKTTEMK-FKPGEEFERTAL 267
            K T    ++ G+ FE   L
Sbjct: 67  KKNTLYHGWELGKTFEAEGL 86


>U40420-5|AAA81433.2|  165|Caenorhabditis elegans Lipid binding
           protein protein 3,isoform a protein.
          Length = 165

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +1

Query: 37  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKD--GDEYNLVTSST 210
           I  +F GK Y +  SENFDEF+   GV    R+       +  L K+    +YN+   ++
Sbjct: 23  IPEKFFGK-YDLDRSENFDEFLAAKGVSWFVRQMIKLAKVSKVLAKNETPGKYNMENLTS 81

Query: 211 FKTTEMK-FKPGEEFERTAL 267
            K T    ++ G+ FE   L
Sbjct: 82  KKNTLYHGWELGKTFEAEGL 101


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
           complex protein protein7 protein.
          Length = 1217

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/53 (39%), Positives = 29/53 (54%)
 Frame = -3

Query: 248 SSPGLNFISVVLKVEEVTKLYSSPSLRSSTVGVTALAALRVIRPTPMVFMNSS 90
           + PGL F S++ K   VT    S +L SST    + +A+  I PT  +F NSS
Sbjct: 840 AKPGL-FGSILDKETHVTTTPVSVALPSSTDSTQSKSAIPTIAPTMSLFGNSS 891


>U40420-8|AAA81435.1|  161|Caenorhabditis elegans Lipid binding
           protein protein 2 protein.
          Length = 161

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 64  YKMTSSENFDEFMKTIGVGLITRKAANAVT 153
           + +  SENFDE++   G G  TRK     T
Sbjct: 30  FDLDHSENFDEYLTAKGYGWFTRKLVTFAT 59


>U40420-7|AAA81434.1|  159|Caenorhabditis elegans Lipid binding
           protein protein 1 protein.
          Length = 159

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 64  YKMTSSENFDEFMKTIGVGLITRKAANAVT 153
           + +  SENFDE++   G G  TRK     T
Sbjct: 28  FDLDHSENFDEYLTAKGYGWFTRKLVTFAT 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,835,072
Number of Sequences: 27780
Number of extensions: 351107
Number of successful extensions: 846
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)