Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40006
(547 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024779-2|AAK68485.1| 299|Caenorhabditis elegans Serpentine re... 32 0.23
AC024779-1|AAP86615.1| 304|Caenorhabditis elegans Serpentine re... 32 0.23
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 31 0.72
U23177-1|AAA64332.1| 431|Caenorhabditis elegans Hypothetical pr... 31 0.72
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 29 2.2
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical... 29 2.2
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical... 29 2.2
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 29 2.9
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 2.9
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 2.9
AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical ... 29 2.9
U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical p... 28 3.8
AL034393-27|CAH19090.1| 710|Caenorhabditis elegans Hypothetical... 28 3.8
AL008866-2|CAA15508.2| 710|Caenorhabditis elegans Hypothetical ... 28 3.8
U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protei... 28 5.0
U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protei... 28 5.0
Z92838-9|CAD30449.1| 549|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z92838-8|CAB07407.1| 401|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z92838-7|CAB07405.1| 593|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 27 6.7
AL132858-3|CAB60478.2| 391|Caenorhabditis elegans Hypothetical ... 27 6.7
AF381628-1|AAL12001.1| 372|Caenorhabditis elegans homeodomain p... 27 6.7
AF286206-1|AAK28741.1| 549|Caenorhabditis elegans C kinase adap... 27 6.7
AF286205-1|AAK28740.1| 593|Caenorhabditis elegans C kinase adap... 27 6.7
Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical p... 27 8.8
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 27 8.8
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 27 8.8
U40934-7|AAA81685.1| 168|Caenorhabditis elegans Hypothetical pr... 27 8.8
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 27 8.8
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 27 8.8
AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical ... 27 8.8
AF040652-2|AAB95019.1| 221|Caenorhabditis elegans Hypothetical ... 27 8.8
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 27 8.8
>AC024779-2|AAK68485.1| 299|Caenorhabditis elegans Serpentine
receptor, class x protein50, isoform a protein.
Length = 299
Score = 32.3 bits (70), Expect = 0.23
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 129 TPRLAGMKRWYRWWHSAVAWHC 64
TPR+ G +RW R++ S VAW C
Sbjct: 227 TPRVDGSERWLRFFLSTVAWVC 248
>AC024779-1|AAP86615.1| 304|Caenorhabditis elegans Serpentine
receptor, class x protein50, isoform b protein.
Length = 304
Score = 32.3 bits (70), Expect = 0.23
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 129 TPRLAGMKRWYRWWHSAVAWHC 64
TPR+ G +RW R++ S VAW C
Sbjct: 232 TPRVDGSERWLRFFLSTVAWVC 253
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
F42C5.10 protein.
Length = 1292
Score = 30.7 bits (66), Expect = 0.72
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +2
Query: 8 NHHAVTHRFGAVFQHHFRQ----QCHATAECHHRYHRFMPANRGVNH 136
+HH H G+ HH+ Q H+TAE H +H +N +H
Sbjct: 948 HHHHHYHTDGSEHVHHYHQDENAHQHSTAENEHIHHYHTTSNENAHH 994
>U23177-1|AAA64332.1| 431|Caenorhabditis elegans Hypothetical
protein C56G2.5 protein.
Length = 431
Score = 30.7 bits (66), Expect = 0.72
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 220 LTSPASLPTPD*HRAGQRGGNQHYCQILQHRKRHCAGQGFRFTRNR 357
+T A LP HR+G R ++H+ Q+++ +K GFR NR
Sbjct: 194 VTGLADLPNNTKHRSG-RYASEHFAQLIKKKKSMFGRHGFRRYPNR 238
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 275 GAISTTARFSSIENATAPGKVSGLPA-IARSASPVTTFSIASAASPVVSLISTDGCSA 445
G TTA SS AT+P P+ + S+SP+ + SI+++A P+ S ++ SA
Sbjct: 2 GTSPTTAGISSSPAATSPSTAVTSPSSLGTSSSPLPS-SISTSALPIASSSASSSPSA 58
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 254 STGQGSAGAISTTARFSSIENATAPGKVSGLPAIARSASPVTTFSIASAASPVVSLIS 427
S SAG ST + + PG S + + +SASP + ++++ + P S ++
Sbjct: 256 SASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMSTVSGPTGSTVT 313
>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
protein Y43F8B.3b protein.
Length = 1398
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 335 VSGLPAIARSASPVTTFSIASAAS---PVVSLISTDGCSARKDSRIG 466
VSGL A+P T + S+ S PVV L + D CS K+ +G
Sbjct: 232 VSGLAEPQTLATPPPTMMVTSSTSQLPPVVYLSTVDPCSQDKEPGVG 278
>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
protein Y43F8B.3a protein.
Length = 1816
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 335 VSGLPAIARSASPVTTFSIASAAS---PVVSLISTDGCSARKDSRIG 466
VSGL A+P T + S+ S PVV L + D CS K+ +G
Sbjct: 232 VSGLAEPQTLATPPPTMMVTSSTSQLPPVVYLSTVDPCSQDKEPGVG 278
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 318 PLRRARFPVYPQSPDPLHQ*P---PFPSHLPHHQ**V*SPPTGVPRGRIPESAADGCRQR 488
P ++ + P Y + P+P Q P P + P+ +PP + PE GCRQR
Sbjct: 182 PQQQPQPPCYQRQPEPPRQTGGCLPGPYYSPNTM----APPQH--QQPYPERNGGGCRQR 235
Query: 489 SPSRRY 506
SP +Y
Sbjct: 236 SPQPQY 241
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 318 PLRRARFPVYPQSPDPLHQ*P---PFPSHLPHHQ**V*SPPTGVPRGRIPESAADGCRQR 488
P ++ + P Y + P+P Q P P + P+ +PP + PE GCRQR
Sbjct: 182 PQQQPQPPCYQRQPEPPRQTGGCLPGPYYSPNTM----APPQH--QQPYPERNGGGCRQR 235
Query: 489 SPSRRY 506
SP +Y
Sbjct: 236 SPQPQY 241
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 318 PLRRARFPVYPQSPDPLHQ*P---PFPSHLPHHQ**V*SPPTGVPRGRIPESAADGCRQR 488
P ++ + P Y + P+P Q P P + P+ +PP + PE GCRQR
Sbjct: 182 PQQQPQPPCYQRQPEPPRQTGGCLPGPYYSPNTM----APPQH--QQPYPERNGGGCRQR 235
Query: 489 SPSRRY 506
SP +Y
Sbjct: 236 SPQPQY 241
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 254 STGQGSAGAISTTARFSSIENATAPGKVSGLPAIARSASPVTTFSIASAASPVVSLIS 427
S SAG ST + + PG S + + +SASP + ++++ + P S ++
Sbjct: 463 SASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMSTVSGPTGSTVT 520
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 254 STGQGSAGAISTTARFSSIENATAPGKVSGLPAIARSASPVTTFSIASAASPVVSLIS 427
S SAG ST + + PG S + + +SASP + ++++ + P S ++
Sbjct: 463 SASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGTMSTVSGPTGSTVT 520
>AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical
protein Y39A1B.2 protein.
Length = 1003
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +2
Query: 236 LYRHLISTGQGSAGAISTTARFSSIENATAPGKVSGLPAIARSASPVTTFSIASAASPVV 415
L+R L T + G + +F+ NA PG +S +IA + V S+ PV
Sbjct: 676 LFRRLAETSELQTGVYADFFQFAEQYNAVLPGTLS---SIAYAGVAVVAVSLILIPEPVA 732
Query: 416 SL 421
SL
Sbjct: 733 SL 734
>U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical
protein R144.2a protein.
Length = 823
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +1
Query: 229 PASLPTPD*HRAGQRGG--NQHYCQ 297
PA+LP P + AGQRGG N+H Q
Sbjct: 587 PANLPIPGMNNAGQRGGYHNRHQPQ 611
>AL034393-27|CAH19090.1| 710|Caenorhabditis elegans Hypothetical
protein B0019.2 protein.
Length = 710
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 22 YAPVRGCFPAPLPATMPRHSRVPPSIPSLHARQPWRKS 135
Y P PAP +++P R+ PS SL+ + W ++
Sbjct: 589 YFPQESSSPAPNRSSVPYFPRISPSTESLNFVEKWEET 626
>AL008866-2|CAA15508.2| 710|Caenorhabditis elegans Hypothetical
protein B0019.2 protein.
Length = 710
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 22 YAPVRGCFPAPLPATMPRHSRVPPSIPSLHARQPWRKS 135
Y P PAP +++P R+ PS SL+ + W ++
Sbjct: 589 YFPQESSSPAPNRSSVPYFPRISPSTESLNFVEKWEET 626
>U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protein
15, isoform a protein.
Length = 780
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 287 TTARFSSIENATAPGKVSGLPAIARSASPVTTFSIASAASPVVSL 421
T A + +AP GLPA + SA+ ++AS SP S+
Sbjct: 128 TVATTQASTTPSAPNPPGGLPAPSASATAAVAAAVASFPSPDTSI 172
>U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protein
15, isoform b protein.
Length = 777
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 287 TTARFSSIENATAPGKVSGLPAIARSASPVTTFSIASAASPVVSL 421
T A + +AP GLPA + SA+ ++AS SP S+
Sbjct: 125 TVATTQASTTPSAPNPPGGLPAPSASATAAVAAAVASFPSPDTSI 169
>Z92838-9|CAD30449.1| 549|Caenorhabditis elegans Hypothetical
protein T03D8.1c protein.
Length = 549
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 273 RGQSALLPDSPASKTPLRRARFPVYPQS-PDPLHQ*PPFP 389
R ++ P SP+S P + + V P+S P P H PP P
Sbjct: 446 RVSMSMSPTSPSSDPP-STSSYSVLPKSGPPPAHAPPPLP 484
>Z92838-8|CAB07407.1| 401|Caenorhabditis elegans Hypothetical
protein T03D8.1b protein.
Length = 401
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 273 RGQSALLPDSPASKTPLRRARFPVYPQS-PDPLHQ*PPFP 389
R ++ P SP+S P + + V P+S P P H PP P
Sbjct: 298 RVSMSMSPTSPSSDPP-STSSYSVLPKSGPPPAHAPPPLP 336
>Z92838-7|CAB07405.1| 593|Caenorhabditis elegans Hypothetical
protein T03D8.1a protein.
Length = 593
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 273 RGQSALLPDSPASKTPLRRARFPVYPQS-PDPLHQ*PPFP 389
R ++ P SP+S P + + V P+S P P H PP P
Sbjct: 490 RVSMSMSPTSPSSDPP-STSSYSVLPKSGPPPAHAPPPLP 528
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 27.5 bits (58), Expect = 6.7
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +3
Query: 255 APGRAARGQSALLPDSPASKTPLRRARFP--VYPQ-SP-DPLHQ*PPFPS 392
AP R A +PAS+ P+R P YP +P +P H P +PS
Sbjct: 320 APPATTRAPPATTRPAPASQPPVREPETPDSGYPSPAPQEPAHPSPSYPS 369
>AL132858-3|CAB60478.2| 391|Caenorhabditis elegans Hypothetical
protein Y113G7A.6a protein.
Length = 391
Score = 27.5 bits (58), Expect = 6.7
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Frame = -1
Query: 367 SGSGDCG*TGNLARRSGVFDAGES--GSSADCPRAALPGANQVSVEKPDWSTVPFIMADQ 194
SGSG G TG+ SG F S G+ A + N VS ++ D P +M
Sbjct: 25 SGSGTGGNTGSTTMNSGNFIPTPSLTGTGASQSSGSASSGNFVSPDETDTKPSPSLMDHN 84
Query: 193 GPVRRRIELWFRRNKISNPMIYATV 119
P + + +++P TV
Sbjct: 85 DPTSSLSQQLAQGATLTSPYSTTTV 109
>AF381628-1|AAL12001.1| 372|Caenorhabditis elegans homeodomain
protein TTX-1 protein.
Length = 372
Score = 27.5 bits (58), Expect = 6.7
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Frame = -1
Query: 367 SGSGDCG*TGNLARRSGVFDAGES--GSSADCPRAALPGANQVSVEKPDWSTVPFIMADQ 194
SGSG G TG+ SG F S G+ A + N VS ++ D P +M
Sbjct: 6 SGSGTGGNTGSTTMNSGNFIPTPSLTGTGASQSSGSASSGNFVSPDETDTKPSPSLMDHN 65
Query: 193 GPVRRRIELWFRRNKISNPMIYATV 119
P + + +++P TV
Sbjct: 66 DPTSSLSQQLAQGATLTSPYSTTTV 90
>AF286206-1|AAK28741.1| 549|Caenorhabditis elegans C kinase adapter
1s protein.
Length = 549
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 273 RGQSALLPDSPASKTPLRRARFPVYPQS-PDPLHQ*PPFP 389
R ++ P SP+S P + + V P+S P P H PP P
Sbjct: 446 RVSMSMSPTSPSSDPP-STSSYSVLPKSGPPPAHAPPPLP 484
>AF286205-1|AAK28740.1| 593|Caenorhabditis elegans C kinase adapter
1 protein.
Length = 593
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 273 RGQSALLPDSPASKTPLRRARFPVYPQS-PDPLHQ*PPFP 389
R ++ P SP+S P + + V P+S P P H PP P
Sbjct: 490 RVSMSMSPTSPSSDPP-STSSYSVLPKSGPPPAHAPPPLP 528
>Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical
protein C04A11.2 protein.
Length = 439
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 287 TTARFSSIENATAPGK--VSGLPAIARSASPVTTFSIASAASPVVSLISTDGCSARKDSR 460
TT R + A G +G P + R+ PVT + +S SP + T G S+ SR
Sbjct: 165 TTPRSARTSTRAASGNRTPTGTPNMTRNVRPVTNRTSSSNVSPAAQV--TPGTSSNHRSR 222
Query: 461 I 463
+
Sbjct: 223 L 223
>Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical
protein T06E4.10 protein.
Length = 180
Score = 27.1 bits (57), Expect = 8.8
Identities = 24/95 (25%), Positives = 39/95 (41%)
Frame = +2
Query: 152 IASKPQFNAAAYRPLIGHNKRHR*PVRLLYRHLISTGQGSAGAISTTARFSSIENATAPG 331
+A+ P F A AY P +G Y ++ + + A + A AP
Sbjct: 42 VAAAPAFAAPAYAPALGAPAYAPALAAPAYAPGLAAPAFAPAPVVAAAPALAPAYAPAP- 100
Query: 332 KVSGLPAIARSASPVTTFSIASAASPVVSLISTDG 436
V+ PA A + +P S AA+P ++ S +G
Sbjct: 101 VVAAAPAFAPAYAPAPVASPMIAAAPALAAASING 135
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -1
Query: 343 TGNLARRSGVFDAGESGSSAD---CPRAALPGA 254
+GN R +DAG +G SA C LPGA
Sbjct: 72 SGNRTARQAGYDAGVTGGSASAGGCDACCLPGA 104
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -1
Query: 343 TGNLARRSGVFDAGESGSSAD---CPRAALPGA 254
+GN R +DAG +G SA C LPGA
Sbjct: 72 SGNRTARQAGYDAGVTGGSASAGGCDACCLPGA 104
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
protein F35A5.1 protein.
Length = 1274
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 303 PASKTPLRRARFPVYPQSPDPLHQ*PPFPS 392
P KTP+ + PV P+ P P P PS
Sbjct: 815 PEKKTPVLAKKTPVKPRDPSPKKAVPAKPS 844
>U40934-7|AAA81685.1| 168|Caenorhabditis elegans Hypothetical
protein F35H10.2 protein.
Length = 168
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 17 AVTHRFGAVFQ-HHFRQQCHATAECHHRYHR 106
A+ ++ A F H Q+C T++ HHR +R
Sbjct: 126 AIREKYSANFYISHIYQRCRVTSKRHHRLYR 156
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -1
Query: 343 TGNLARRSGVFDAGESGSSAD---CPRAALPGA 254
+GN R +DAG +G SA C LPGA
Sbjct: 72 SGNRTARQAGYDAGVTGGSASAGGCDACCLPGA 104
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -1
Query: 343 TGNLARRSGVFDAGESGSSAD---CPRAALPGA 254
+GN R +DAG +G SA C LPGA
Sbjct: 72 SGNRTARQAGYDAGVTGGSASAGGCDACCLPGA 104
>AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical
protein Y67H2A.10 protein.
Length = 608
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 318 PLRRARFPVYPQSPDPLHQ*PPFPSHLPHHQ 410
PL + P Q HQ PP P H P+ Q
Sbjct: 457 PLPSLQHPQQQQQQQQYHQMPPQPQHSPYPQ 487
>AF040652-2|AAB95019.1| 221|Caenorhabditis elegans Hypothetical
protein T05A8.2 protein.
Length = 221
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 10 SSRGYAPVRGCFPAPLPATMPRHSRVPPSIPSLHARQPWRKSS 138
S P G P P +P ++PP +PS+ + +R +S
Sbjct: 129 SGERVCPYCGRRNCPGPVYIPSQMKIPPKLPSVRKTKQYRYNS 171
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 27.1 bits (57), Expect = 8.8
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Frame = +1
Query: 25 APVRGCFPAPLPATMPRHSRVPPSIPSLHARQPWRKSSGY-----*FYCVETTVQCGGVP 189
APV PAP A P P+ + A P SGY + + T P
Sbjct: 113 APVAVPAPAPAAAPAPDCGSAAPAAAAPAAAAPAATDSGYRSKRNAYGDEQVTPAPAAAP 172
Query: 190 AP-DRP**TAPLT----SPASLPTPD 252
AP D P AP+ +PA+ P PD
Sbjct: 173 APADAPVEQAPVAVPAPAPAAAPAPD 198
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,305,041
Number of Sequences: 27780
Number of extensions: 343965
Number of successful extensions: 1371
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -