Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40005
(718 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038615-5|AAB94142.1| 934|Caenorhabditis elegans Hypothetical ... 102 2e-22
EF584656-1|ABQ57414.1| 500|Caenorhabditis elegans LAD-2 short i... 30 1.9
EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long is... 30 1.9
AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobuli... 30 1.9
AC024817-51|AAP68914.1| 496|Caenorhabditis elegans L1 cam adhes... 30 1.9
AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhes... 30 1.9
Z54236-10|CAA90986.1| 407|Caenorhabditis elegans Hypothetical p... 28 5.8
Z54235-12|CAA90977.1| 407|Caenorhabditis elegans Hypothetical p... 28 5.8
>AF038615-5|AAB94142.1| 934|Caenorhabditis elegans Hypothetical
protein R02D3.1 protein.
Length = 934
Score = 102 bits (245), Expect = 2e-22
Identities = 47/90 (52%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Frame = +1
Query: 361 GAPALPHRMLAICDISADPGGSIEFMNECTTIDTPFCLYDADRNKDTKSSKVQEYLCVPS 540
G P LPH ++A+CDISADPGGS+EFM ECTTID PF +YDAD N + S V S
Sbjct: 345 GCPTLPHHLIALCDISADPGGSVEFMRECTTIDKPFAIYDADFNTSSDSFDAASGCLVCS 404
Query: 541 I-TCQLQLPRESTDFFGDLLYPYAEDIMKS 627
I Q+P E+T+ FG+LLYP+ D++ +
Sbjct: 405 IDNMPAQMPIEATEQFGNLLYPWLWDLLNT 434
Score = 33.5 bits (73), Expect = 0.15
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 254 VVNCIYWAVDSPKLLTIPDA 313
++N +YW SP+L+TIPDA
Sbjct: 312 IINGVYWDAQSPRLITIPDA 331
>EF584656-1|ABQ57414.1| 500|Caenorhabditis elegans LAD-2 short
isoform protein.
Length = 500
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 218 RFRYKDRTVHIRVVNCIYWAVDSPKLLTIPDANTSSCRHIPRG 346
R R+ TV++RV+ +W D P+ +++P+ +T + G
Sbjct: 313 RGRHLVHTVNVRVMAAPFWEFDPPRDISLPEESTGELECLAGG 355
>EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long
isoform protein.
Length = 1187
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 218 RFRYKDRTVHIRVVNCIYWAVDSPKLLTIPDANTSSCRHIPRG 346
R R+ TV++RV+ +W D P+ +++P+ +T + G
Sbjct: 313 RGRHLVHTVNVRVMAAPFWEFDPPRDISLPEESTGELECLAGG 355
>AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobulin
domain-containingprotein Y54G2A.25 protein.
Length = 1187
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 218 RFRYKDRTVHIRVVNCIYWAVDSPKLLTIPDANTSSCRHIPRG 346
R R+ TV++RV+ +W D P+ +++P+ +T + G
Sbjct: 313 RGRHLVHTVNVRVMAAPFWEFDPPRDISLPEESTGELECLAGG 355
>AC024817-51|AAP68914.1| 496|Caenorhabditis elegans L1 cam adhesion
molecule homologprotein 2, isoform b protein.
Length = 496
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 218 RFRYKDRTVHIRVVNCIYWAVDSPKLLTIPDANTSSCRHIPRG 346
R R+ TV++RV+ +W D P+ +++P+ +T + G
Sbjct: 313 RGRHLVHTVNVRVMAAPFWEFDPPRDISLPEESTGELECLAGG 355
>AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhesion
molecule homologprotein 2, isoform a protein.
Length = 1187
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 218 RFRYKDRTVHIRVVNCIYWAVDSPKLLTIPDANTSSCRHIPRG 346
R R+ TV++RV+ +W D P+ +++P+ +T + G
Sbjct: 313 RGRHLVHTVNVRVMAAPFWEFDPPRDISLPEESTGELECLAGG 355
>Z54236-10|CAA90986.1| 407|Caenorhabditis elegans Hypothetical
protein C09G9.6 protein.
Length = 407
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/79 (18%), Positives = 36/79 (45%)
Frame = +1
Query: 424 SIEFMNECTTIDTPFCLYDADRNKDTKSSKVQEYLCVPSITCQLQLPRESTDFFGDLLYP 603
+I+ + + PF +D R + K + Y ++ CQ L ++ F + +
Sbjct: 80 AIQSFPQNNQVAPPFQQFDPRRRGLARMQKPESY---KTVICQAWLESKTCSFADNCRFA 136
Query: 604 YAEDIMKSDATKPLEEHKF 660
+ E+ ++ +PL+ +K+
Sbjct: 137 HGEEELRPTFVEPLQNNKY 155
>Z54235-12|CAA90977.1| 407|Caenorhabditis elegans Hypothetical
protein C09G9.6 protein.
Length = 407
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/79 (18%), Positives = 36/79 (45%)
Frame = +1
Query: 424 SIEFMNECTTIDTPFCLYDADRNKDTKSSKVQEYLCVPSITCQLQLPRESTDFFGDLLYP 603
+I+ + + PF +D R + K + Y ++ CQ L ++ F + +
Sbjct: 80 AIQSFPQNNQVAPPFQQFDPRRRGLARMQKPESY---KTVICQAWLESKTCSFADNCRFA 136
Query: 604 YAEDIMKSDATKPLEEHKF 660
+ E+ ++ +PL+ +K+
Sbjct: 137 HGEEELRPTFVEPLQNNKY 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,560,516
Number of Sequences: 27780
Number of extensions: 366152
Number of successful extensions: 958
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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