Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30036
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...   130   5e-31
AF098996-1|AAM34815.1|  523|Caenorhabditis elegans Hypothetical ...    30   1.4  
U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian ...    29   2.4  
U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian ...    29   2.4  
U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeas...    29   3.1  
AF016449-17|AAG24005.1|  306|Caenorhabditis elegans Hypothetical...    27   7.2  
Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score =  130 bits (315), Expect = 5e-31
 Identities = 61/86 (70%), Positives = 73/86 (84%), Gaps = 2/86 (2%)
 Frame = +1

Query: 256 YKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHF 435
           Y +PK++VAALHVTE ARARILAAGGEI+T DQLAL++P G+ TV +QG R+AREA +HF
Sbjct: 93  YTVPKISVAALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFLQGPRSAREAEKHF 152

Query: 436 GPAPGAPRSHTKPYVRTKGH--EKAR 507
           GPAPG P SHTKPYVR+KG   E+AR
Sbjct: 153 GPAPGVPHSHTKPYVRSKGRKFERAR 178



 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 34/82 (41%), Positives = 45/82 (54%)
 Frame = +2

Query: 2   KHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLA 181
           KHDR  RRT  KS++                T  KFN IVL+RL MSR NR P+S+++LA
Sbjct: 8   KHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSLAKLA 67

Query: 182 SHMKKPTREGLIAVVVGTVTND 247
             ++K   E    V + TVT+D
Sbjct: 68  RAVQKAGNENKTVVTLSTVTDD 89


>AF098996-1|AAM34815.1|  523|Caenorhabditis elegans Hypothetical
           protein T11F1.7 protein.
          Length = 523

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
 Frame = -3

Query: 393 QYCLLASRSTKSQ---LIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVRLTSFVTVPTT 223
           +YC      T+SQ   + K +  S+  +N CTS FG++       R+L +L    T+  +
Sbjct: 330 RYCADVYNETESQNTDVCKFQKLSTLKEN-CTSLFGDVVVDANDGRFLYKLFYVGTIFGS 388

Query: 222 TAIKPSRVGFFMWLAKRDT--EIGGRLIRLIK 133
             I+ S++    +L+   T   + GR +R+ +
Sbjct: 389 LKIQYSKIEGLFFLSNLVTIANLDGRNLRIFR 420


>U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform b protein.
          Length = 199

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 106 IQSDRSTPALYEPYQPATNLCVSFGEPHEEANS*GFDCR-GSGDSHK*RETY 258
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS + R  Y
Sbjct: 116 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSSQFRAYY 167


>U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform a protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 106 IQSDRSTPALYEPYQPATNLCVSFGEPHEEANS*GFDCR-GSGDSHK*RETY 258
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS + R  Y
Sbjct: 200 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSSQFRAYY 251


>U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeast
           longevity geneprotein 2 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +2

Query: 278 WLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYWYKVSEMLVRQCVTLALL 445
           W    +P  +   +W+    ++ L+  +  L   R  +W    +MLV   +TLAL+
Sbjct: 125 WPFHPIPNAVAWYYWIQGGFYIALVFGILFLDAKRSDFW----QMLVHHFITLALI 176


>AF016449-17|AAG24005.1|  306|Caenorhabditis elegans Hypothetical
           protein C50H11.17 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 145 YQPATNLCVSFGEPHEEANS*GFDCRGSGDSH 240
           Y+ A NLC++  +P E+ANS  F C   G  H
Sbjct: 229 YEDAFNLCLNEVKPREDANS--FPCFIDGRFH 258


>Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical
           protein Y53C12A.3 protein.
          Length = 557

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -3

Query: 411 ISLTLYQYC-LLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVRLTSF 241
           IS  L+  C LLA+      ++ S  +S +SQ           SSH HL + V L SF
Sbjct: 172 ISGALWIACFLLAAEQPFLTILSSFGYSLTSQCLVLLLTSLFHSSHDHLFFFVLLASF 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,719,253
Number of Sequences: 27780
Number of extensions: 303901
Number of successful extensions: 838
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)