Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30031
(383 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical pr... 87 4e-18
AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal... 87 4e-18
Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical pr... 27 3.4
AF026201-1|AAB71239.1| 113|Caenorhabditis elegans Hypothetical ... 27 3.4
Z83125-4|CAB05616.1| 376|Caenorhabditis elegans Hypothetical pr... 27 4.5
U50308-5|AAG24033.2| 284|Caenorhabditis elegans Seven tm recept... 27 6.0
Z81041-6|CAB02788.1| 336|Caenorhabditis elegans Hypothetical pr... 26 7.9
AY518688-1|AAR99814.1| 107|Caenorhabditis elegans BET1 protein. 26 7.9
AC024838-2|AAU87809.1| 107|Caenorhabditis elegans Hypothetical ... 26 7.9
>Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical
protein C09H10.2 protein.
Length = 105
Score = 87.0 bits (206), Expect = 4e-18
Identities = 44/82 (53%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +2
Query: 23 MVNVPKQRRTYXXXXXXXXXXXX-TQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 199
MVNVPK RRT+ TQYKK KE AQGRRRYDRKQ G+GGQ+KPIF
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 200 XXXXXXIVLRLECADCKVNHRL 265
IVLR+EC +CK +L
Sbjct: 61 AKTTKKIVLRMECTECKHKKQL 82
Score = 46.4 bits (105), Expect = 7e-06
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +1
Query: 253 ESQVALKRCKHFELGGDKKRKGQMIQF 333
+ Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 79 KKQLPIKRCKHFELGGQKKSRGQVIQF 105
>AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal
protein L44 L41 protein.
Length = 105
Score = 87.0 bits (206), Expect = 4e-18
Identities = 44/82 (53%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +2
Query: 23 MVNVPKQRRTYXXXXXXXXXXXX-TQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 199
MVNVPK RRT+ TQYKK KE AQGRRRYDRKQ G+GGQ+KPIF
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 200 XXXXXXIVLRLECADCKVNHRL 265
IVLR+EC +CK +L
Sbjct: 61 AKTTKKIVLRMECTECKHKKQL 82
Score = 46.4 bits (105), Expect = 7e-06
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +1
Query: 253 ESQVALKRCKHFELGGDKKRKGQMIQF 333
+ Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 79 KKQLPIKRCKHFELGGQKKSRGQVIQF 105
>Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical
protein ZK512.5 protein.
Length = 1232
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 274 SSMQPVIHLAISTLKTEHNFLSGFCLL 194
++MQ + HL + K E N + FCLL
Sbjct: 630 TAMQTIYHLGLLLAKRERNCAADFCLL 656
>AF026201-1|AAB71239.1| 113|Caenorhabditis elegans Hypothetical
protein D1079.1 protein.
Length = 113
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -1
Query: 125 QRAFPW-TFCTVLPCVLCGIYIFC--STSCAVLVRSPFLSSF 9
QR++P+ TF L +LC +YI C S +V + FL +F
Sbjct: 30 QRSYPFQTFLAFLDFMLCALYIHCFGLLSISVEYKIAFLYNF 71
>Z83125-4|CAB05616.1| 376|Caenorhabditis elegans Hypothetical
protein T15D6.5 protein.
Length = 376
Score = 27.1 bits (57), Expect = 4.5
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 33 YQNSAGRTAKNVNATKYTR*HSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPL 212
Y +AGRT + + + KS R LP++++ + +V+ P S R+K L
Sbjct: 86 YSTTAGRTRDFGSRFRVSFADIQKSQRWLHLPKIKNPTWNRDILMIVASRPGSVSRRKVL 145
Query: 213 RK 218
RK
Sbjct: 146 RK 147
>U50308-5|AAG24033.2| 284|Caenorhabditis elegans Seven tm receptor
protein 94 protein.
Length = 284
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 135 LPWAACLSLDFLYCVTLCTLWHLHFLQY 52
+ W +CL++ +YC+ + TL + L Y
Sbjct: 141 IQWKSCLAMTNVYCIAITTLVTIMSLGY 168
>Z81041-6|CAB02788.1| 336|Caenorhabditis elegans Hypothetical
protein C27A7.7 protein.
Length = 336
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 105 FLYCVTLCTLWHLHFLQYVLRCFGTFTI 22
F+Y V L T ++ +Y+L CFG F I
Sbjct: 26 FIYVVLLNTRANIGAYKYMLVCFGLFDI 53
>AY518688-1|AAR99814.1| 107|Caenorhabditis elegans BET1 protein.
Length = 107
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 109 GLFVLCYLVYFVAFTFFAV 53
G +LCYL+ F F FF V
Sbjct: 83 GKNMLCYLILFALFVFFVV 101
>AC024838-2|AAU87809.1| 107|Caenorhabditis elegans Hypothetical
protein Y59E9AL.7 protein.
Length = 107
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 109 GLFVLCYLVYFVAFTFFAV 53
G +LCYL+ F F FF V
Sbjct: 83 GKNMLCYLILFALFVFFVV 101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,711,524
Number of Sequences: 27780
Number of extensions: 174094
Number of successful extensions: 562
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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