Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30025X
         (414 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF116529-1|AAD05570.1|  961|Caenorhabditis elegans synthetic mul...    28   2.3  
AF000195-1|AAC24266.2|  961|Caenorhabditis elegans Abnormal cell...    28   2.3  

>AF116529-1|AAD05570.1|  961|Caenorhabditis elegans synthetic
           multivulva protein LIN-35 Rb protein.
          Length = 961

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = -1

Query: 360 KMLLQKFHYAVIT--NSFKASVQETIMKLYRFCAMST*QQLSSPRSYFRTMMLDKKPKNL 187
           ++L+Q F  +++T  NSF  SV E + K  RF  +   +++   + Y R +      + L
Sbjct: 192 RILIQPFPVSILTIANSFDISVAEMLDKTARFVEIIHSRKIRRYQEYIRRIQ-----EGL 246

Query: 186 YTSCFV*DQLCK 151
             SC +  + C+
Sbjct: 247 AVSCVIFKKFCR 258


>AF000195-1|AAC24266.2|  961|Caenorhabditis elegans Abnormal cell
           lineage protein 35 protein.
          Length = 961

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = -1

Query: 360 KMLLQKFHYAVIT--NSFKASVQETIMKLYRFCAMST*QQLSSPRSYFRTMMLDKKPKNL 187
           ++L+Q F  +++T  NSF  SV E + K  RF  +   +++   + Y R +      + L
Sbjct: 192 RILIQPFPVSILTIANSFDISVAEMLDKTARFVEIIHSRKIRRYQEYIRRIQ-----EGL 246

Query: 186 YTSCFV*DQLCK 151
             SC +  + C+
Sbjct: 247 AVSCVIFKKFCR 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,547,116
Number of Sequences: 27780
Number of extensions: 147284
Number of successful extensions: 251
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)