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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10408
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024830-3|AAF59604.3|  180|Caenorhabditis elegans Hypothetical ...    38   0.004
M14334-2|AAA28071.1|  145|Caenorhabditis elegans protein ( C.ele...    34   0.085
AC006774-1|AAF60615.1|  145|Caenorhabditis elegans Heat shock pr...    34   0.085
L15188-10|AAA27953.1|  110|Caenorhabditis elegans Heat shock pro...    31   0.45 
Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U29612-8|AAW57827.1|  108|Caenorhabditis elegans Heat shock prot...    29   2.4  
U29612-7|AAO61437.1|  205|Caenorhabditis elegans Heat shock prot...    29   2.4  
U29612-6|AAA68804.1|  219|Caenorhabditis elegans Heat shock prot...    29   2.4  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U00043-5|AAN65292.1|  505|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z50858-5|CAA90722.1|  534|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U13074-1|AAA96982.1|  534|Caenorhabditis elegans steroid hormone...    27   7.4  
AF273840-1|AAG15187.1|  553|Caenorhabditis elegans sex-1 protein.      27   7.4  
AF049869-1|AAC77795.1|  556|Caenorhabditis elegans SEX-1 protein.      27   7.4  
Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z36237-1|CAA85271.2|  619|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U13076-1|AAA96984.1|  463|Caenorhabditis elegans steroid hormone...    27   9.7  
AY204167-1|AAO39171.1|  619|Caenorhabditis elegans nuclear recep...    27   9.7  
AF273770-1|AAG15119.1|  469|Caenorhabditis elegans nuclear recep...    27   9.7  
AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical ...    27   9.7  
AF083224-1|AAD03682.1|  619|Caenorhabditis elegans nuclear recep...    27   9.7  

>AC024830-3|AAF59604.3|  180|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.6 protein.
          Length = 180

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +1

Query: 76  IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 237
           I V+GS   KED +    S F   + LP   +   V ++LT+DG+L + A   E
Sbjct: 104 IIVEGSHGEKEDTYGTIESTFKRRFPLPKAVAPESVQSQLTADGHLTIDAKAPE 157


>M14334-2|AAA28071.1|  145|Caenorhabditis elegans protein (
           C.elegans heat shockprotein genes 16-41 and 16-2,
           complete cds, flanked byCeRep16 repetitive elements. ).
          Length = 145

 Score = 33.9 bits (74), Expect = 0.085
 Identities = 21/64 (32%), Positives = 27/64 (42%)
 Frame = +1

Query: 67  GDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVD 246
           G  + +QG QE K D H      F     LP +     V + L+ DG L + AP  E V 
Sbjct: 70  GRTLSIQGEQELKTD-HGYSKKSFSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAVQ 128

Query: 247 KTKI 258
              I
Sbjct: 129 GRSI 132


>AC006774-1|AAF60615.1|  145|Caenorhabditis elegans Heat shock
           protein protein 16.2 protein.
          Length = 145

 Score = 33.9 bits (74), Expect = 0.085
 Identities = 21/64 (32%), Positives = 27/64 (42%)
 Frame = +1

Query: 67  GDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVD 246
           G  + +QG QE K D H      F     LP +     V + L+ DG L + AP  E V 
Sbjct: 70  GRTLSIQGEQELKTD-HGYSKKSFSRVILLPEDVDVGAVASNLSEDGKLSIEAPKKEAVQ 128

Query: 247 KTKI 258
              I
Sbjct: 129 GRSI 132


>L15188-10|AAA27953.1|  110|Caenorhabditis elegans Heat shock
           protein protein 12.2 protein.
          Length = 110

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +1

Query: 67  GDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTA 225
           G  + +    E + D+H   A +    Y LP +   + V + L + G L +TA
Sbjct: 54  GQELLIHCRHETRSDNHGTVAREINRAYKLPDDVDVSTVKSHLATRGVLTITA 106


>Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical
           protein C16C10.3 protein.
          Length = 1032

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +2

Query: 257 YRARCTYCRDWRSVQEGRACR---KDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTD 427
           YR   +  RD+R V   R      +D+SR     YDS  +  SS+G+D S     E   +
Sbjct: 324 YRGGRSDSRDFRGVYGNRGGNDRYRDESRGRRDMYDSRRDSGSSNGADYSPSDAAE--LE 381

Query: 428 HALRTR 445
           HA   R
Sbjct: 382 HAFGER 387


>U29612-8|AAW57827.1|  108|Caenorhabditis elegans Heat shock protein
           protein 25,isoform c protein.
          Length = 108

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 76  IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 237
           + V    E K     VF  ++   + LP  ++   +++ L++DG L V AP+ +
Sbjct: 51  LLVHAKHEEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 103


>U29612-7|AAO61437.1|  205|Caenorhabditis elegans Heat shock protein
           protein 25,isoform b protein.
          Length = 205

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 76  IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 237
           + V    E K     VF  ++   + LP  ++   +++ L++DG L V AP+ +
Sbjct: 148 LLVHAKHEEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 200


>U29612-6|AAA68804.1|  219|Caenorhabditis elegans Heat shock protein
           protein 25,isoform a protein.
          Length = 219

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 76  IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISE 237
           + V    E K     VF  ++   + LP  ++   +++ L++DG L V AP+ +
Sbjct: 162 LLVHAKHEEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGVLTVEAPLPQ 214


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical
           protein C06B8.7 protein.
          Length = 3118

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 203 MDTSS*RRRSAKMLIKRKYRARCTYCRDWRSVQEGRACR 319
           +D  + R+   ++  + ++R+ CT   +W S+  G ACR
Sbjct: 130 VDGPTVRQGRLQVQFRDRWRSVCTMVTNWTSIDTGTACR 168


>U00043-5|AAN65292.1|  505|Caenorhabditis elegans Hypothetical
           protein T26A5.5b protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 560 TYKKIFY*ILISL-NAYTNYHLSRNFVSVWDHVV 462
           T+ K+    L+S+ N YT++H+  +  SVW HV+
Sbjct: 142 TFPKVQNYCLMSVANCYTDFHIDFSGTSVWYHVL 175


>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical
           protein T26A5.5a protein.
          Length = 1076

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 560 TYKKIFY*ILISL-NAYTNYHLSRNFVSVWDHVV 462
           T+ K+    L+S+ N YT++H+  +  SVW HV+
Sbjct: 142 TFPKVQNYCLMSVANCYTDFHIDFSGTSVWYHVL 175


>Z50858-5|CAA90722.1|  534|Caenorhabditis elegans Hypothetical
           protein F44A6.2 protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +2

Query: 245 IKRKYRARCTYCRDWRSVQEGRACRKDDSRNLGRFYDSGAEDISSSG---SDCSTGTRGE 415
           IKR+ R RC YCR  + +  G +  KD  R + +F ++  +D S       + ST  R E
Sbjct: 195 IKRESRNRCQYCRFKKCLDSGMS--KDSVRQM-KFRNAMRDDKSPDSVFVPEISTLERQE 251

Query: 416 E 418
           E
Sbjct: 252 E 252


>U13074-1|AAA96982.1|  534|Caenorhabditis elegans steroid hormone
           receptor familymember CNR14 protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +2

Query: 245 IKRKYRARCTYCRDWRSVQEGRACRKDDSRNLGRFYDSGAEDISSSG---SDCSTGTRGE 415
           IKR+ R RC YCR  + +  G +  KD  R + +F ++  +D S       + ST  R E
Sbjct: 195 IKRESRNRCQYCRFKKCLDSGMS--KDSVRQM-KFRNAMRDDKSPDSVFVPEISTLERQE 251

Query: 416 E 418
           E
Sbjct: 252 E 252


>AF273840-1|AAG15187.1|  553|Caenorhabditis elegans sex-1 protein.
          Length = 553

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +2

Query: 245 IKRKYRARCTYCRDWRSVQEGRACRKDDSRNLGRFYDSGAEDISSSG---SDCSTGTRGE 415
           IKR+ R RC YCR  + +  G +  KD  R + +F ++  +D S       + ST  R E
Sbjct: 192 IKRESRNRCQYCRFKKCLDSGMS--KDSVRQM-KFRNAMRDDKSPDSVFVPEISTLERQE 248

Query: 416 E 418
           E
Sbjct: 249 E 249


>AF049869-1|AAC77795.1|  556|Caenorhabditis elegans SEX-1 protein.
          Length = 556

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +2

Query: 245 IKRKYRARCTYCRDWRSVQEGRACRKDDSRNLGRFYDSGAEDISSSG---SDCSTGTRGE 415
           IKR+ R RC YCR  + +  G +  KD  R + +F ++  +D S       + ST  R E
Sbjct: 195 IKRESRNRCQYCRFKKCLDSGMS--KDSVRQM-KFRNAMRDDKSPDSVFVPEISTLERQE 251

Query: 416 E 418
           E
Sbjct: 252 E 252


>Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical
           protein F28C1.1 protein.
          Length = 672

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 23/80 (28%), Positives = 36/80 (45%)
 Frame = +2

Query: 248 KRKYRARCTYCRDWRSVQEGRACRKDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTD 427
           +R+ R+R +  RD R  +   + R+  SR+  R   S + D      D     R   R  
Sbjct: 414 RRRSRSR-SRTRDRRRPRRSNSRRRSRSRDRQR--RSRSRDRRRYSPDRRERRRSRSRDR 470

Query: 428 HALRTR*SDRKRQRDPTRKR 487
              R+R + R+RQR   R+R
Sbjct: 471 RRHRSRSTSRRRQRSKDRRR 490


>Z36237-1|CAA85271.2|  619|Caenorhabditis elegans Hypothetical
           protein C48D5.1 protein.
          Length = 619

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 245 IKRKYRARCTYCRDWRSVQEG 307
           I ++YR+RC YCR  + ++ G
Sbjct: 312 IDKRYRSRCQYCRYQKCLEVG 332


>U13076-1|AAA96984.1|  463|Caenorhabditis elegans steroid hormone
           receptor familymember CNR8 protein.
          Length = 463

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 245 IKRKYRARCTYCRDWRSVQEG 307
           I ++YR+RC YCR  + ++ G
Sbjct: 156 IDKRYRSRCQYCRYQKCLEVG 176


>AY204167-1|AAO39171.1|  619|Caenorhabditis elegans nuclear receptor
           NHR-6 protein.
          Length = 619

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 245 IKRKYRARCTYCRDWRSVQEG 307
           I ++YR+RC YCR  + ++ G
Sbjct: 312 IDKRYRSRCQYCRYQKCLEVG 332


>AF273770-1|AAG15119.1|  469|Caenorhabditis elegans nuclear receptor
           NHR-6 protein.
          Length = 469

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 245 IKRKYRARCTYCRDWRSVQEG 307
           I ++YR+RC YCR  + ++ G
Sbjct: 162 IDKRYRSRCQYCRYQKCLEVG 182


>AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical
           protein F49F1.8 protein.
          Length = 615

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 224 RRSAKML-IKRKYRARCTYCRDWRSVQEGRACRKDDSRNLGRFYDSGAEDISS 379
           R++ K++ + R+++ +C YC++   +   R C+K       + Y+  A  I+S
Sbjct: 560 RKTVKLIQVDRRFKGQCHYCKNVGHM--ARNCKKKAFAEKRKGYEDQARSITS 610


>AF083224-1|AAD03682.1|  619|Caenorhabditis elegans nuclear receptor
           NHR-6 protein.
          Length = 619

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 245 IKRKYRARCTYCRDWRSVQEG 307
           I ++YR+RC YCR  + ++ G
Sbjct: 312 IDKRYRSRCQYCRYQKCLEVG 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,222,380
Number of Sequences: 27780
Number of extensions: 154126
Number of successful extensions: 633
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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