Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10407
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   119   2e-27
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    31   1.1  
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.       30   1.4  
AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AC006649-2|AAF39864.2|  259|Caenorhabditis elegans Hypothetical ...    28   7.6  
AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  119 bits (286), Expect = 2e-27
 Identities = 60/84 (71%), Positives = 68/84 (80%)
 Frame = +3

Query: 6   RQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLC 185
           RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL    ++E  FRKF+LIAE VQG+NVL 
Sbjct: 40  RQVGKTLINRTQGTKIASEGLKGRVFEVSLGDLN---NSEADFRKFKLIAEDVQGKNVLT 96

Query: 186 NFHGMDLTTDKLRWMVKKWQTLIK 257
           NFH M +T DKL  +VKKW TLI+
Sbjct: 97  NFHAMSMTHDKLCSIVKKWHTLIE 120



 Score = 97.9 bits (233), Expect = 6e-21
 Identities = 46/85 (54%), Positives = 59/85 (69%)
 Frame = +2

Query: 254 QANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSEL 433
           +AN  VKTTDGY LRVF I FT K     +KT Y + +++R IR +M   I ++VT  +L
Sbjct: 120 EANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDL 179

Query: 434 REVVNKLIPDSIAKDIEKACHGIYP 508
           +EVV+KLIPDSI KDIEK C  +YP
Sbjct: 180 KEVVSKLIPDSIGKDIEKTCSKLYP 204



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 24/55 (43%), Positives = 37/55 (67%)
 Frame = +1

Query: 505 PLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXXDKSERPEGYEPPVQESV 669
           PL++V IRKVK++KRP+ ++ +L +LH           +K +RP+ YEPPVQ+ V
Sbjct: 204 PLQEVYIRKVKIIKRPKVDLGRLHDLH-GDSITVGADGEKVDRPDDYEPPVQQEV 257


>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
           see also lmb-protein 2 protein.
          Length = 1535

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/60 (35%), Positives = 27/60 (45%)
 Frame = -2

Query: 368 ECAGRSTSCVGSRSPYW*NQCRRHVERIHRLSSHQCWLDESLPFFNHPPELIGCEVHAVE 189
           +C G ++ CVGS S    N+     E  H      C  +E LPF+N  P   G  V A E
Sbjct: 273 KCNGHASECVGSSSVDGENRLVCRCE--HNTQGADC--NECLPFYNDRPWRSGTSVEANE 328


>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical protein
            C25G4.5 protein.
          Length = 1263

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -3

Query: 250  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARE-TSKTL 74
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R   S  +
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKRSWMSDFI 1181

Query: 73   PFNPSEAI 50
              N SE++
Sbjct: 1182 VLNSSESL 1189


>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
          Length = 1263

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -3

Query: 250  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARE-TSKTL 74
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R   S  +
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKRSWMSDFI 1181

Query: 73   PFNPSEAI 50
              N SE++
Sbjct: 1182 VLNSSESL 1189


>AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical
           protein C18E3.3 protein.
          Length = 893

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 27  VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIA-EYVQGRNVLCNFHGMD 203
           + RT+ +KI S GL  ++ E S  ++    +A R +R F   A EY+ G N++    G  
Sbjct: 144 LKRTKESKIGS-GLPRKLEEDS--NISEFHNAHRFYRSFLEAAVEYLYGYNIMWEIDGGG 200

Query: 204 LTTDKLRW 227
              D++ W
Sbjct: 201 RLEDEINW 208


>Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical
           protein F49C5.3 protein.
          Length = 551

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 317 TNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE---VVNKLIPDSIAKDIE 484
           T + S+S     + QH Q RA++K M E +   V N ++ E   VV K + D    +I+
Sbjct: 198 TGRSSISAGFDVF-QHLQNRAVQKTMIEQLESAVRNQDVMEMGNVVKKGLEDGTLSEIQ 255


>Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical
           protein B0001.7 protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +3

Query: 66  LKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRN 176
           L+G  + +S+ D +A TD E S +  R IAE+++ R+
Sbjct: 201 LRGCSWIMSVVDGKAQTDGEFSDKDLREIAEFIRERH 237


>AC006649-2|AAF39864.2|  259|Caenorhabditis elegans Hypothetical
           protein H01M10.1 protein.
          Length = 259

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 501 STLARCLHPKGESVEEAPFRDLEVDGT 581
           ST A C  P+  SV E PF  +  DGT
Sbjct: 76  STSASCSQPRAPSVYEDPFVAVAADGT 102


>AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical
           protein C30F12.1 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
 Frame = -3

Query: 571 TSRSRNGASSTLSPF--GCKHRARVDAMAGLLDVLGN-------GVRNQLVHHLPEFRVS 419
           TS  R G  + L+P+     H+  V +M+  +   G        G   Q++   P   ++
Sbjct: 14  TSNQR-GLGTRLNPYYQSTPHQPMVQSMSNPIGSYGEQGNAQIIGSSGQVLSTGPPPGLA 72

Query: 418 DVACNDFTHFLSDCSDLSVLGVAR 347
            V CNDF    S C D+S   ++R
Sbjct: 73  PVQCNDFDSCYSSCDDISHPSLSR 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,642,170
Number of Sequences: 27780
Number of extensions: 332571
Number of successful extensions: 1023
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)