Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10405
         (814 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   103   2e-22
Z81097-14|CAB03171.2|  221|Caenorhabditis elegans Hypothetical p...    30   1.7  
Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.    28   6.9  
Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical p...    28   6.9  
AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical ...    28   6.9  
AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical ...    28   6.9  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  103 bits (246), Expect = 2e-22
 Identities = 54/123 (43%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
 Frame = +1

Query: 10  WSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXX 189
           W+DI KVY S+R RAGKGK+RNR+  Q+ GP++I+ +D    RAFRNIPGV+        
Sbjct: 176 WADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVMNVERLN 235

Query: 190 XXXXAPGGHLGRFVIWTQSAFGGL-TPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSSL 366
               APGGHLGR +IWT+SAF  L T Y     +    ++  + P    P + +  FS +
Sbjct: 236 LLKLAPGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGWSVP---LPIMANSDFSRI 292

Query: 367 MRS 375
           +RS
Sbjct: 293 IRS 295



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 31/81 (38%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
 Frame = +3

Query: 252 RRLDPLFGSWKTPSKQ-KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKL 428
           ++LD ++G+    S Q KK +++P P MAN+D +R+++S+E+ K +RAP K  +      
Sbjct: 257 KKLDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHR 316

Query: 429 NPLTNNKAMLKLNPYAAVLKR 491
           NPL     + KLNPYA++L++
Sbjct: 317 NPLKKRTLLYKLNPYASILRK 337


>Z81097-14|CAB03171.2|  221|Caenorhabditis elegans Hypothetical
           protein K07A1.10 protein.
          Length = 221

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 246 RIRRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 398
           RIR +   FG W  P   +    L Q +       ++ K DEI+K   A N
Sbjct: 168 RIRDIQEYFGYWMDPKDPRFEVMLQQKEAEEKKAVKMAKRDEIQKKRFAEN 218


>Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +3

Query: 339 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 494
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600


>Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +3

Query: 339 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 494
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600


>AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +3

Query: 339 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 494
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600


>AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical
           protein T28C12.3 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -2

Query: 204 SQLQEVQLVNIQELHTG--DVAEGASQTLILVEDYEGSLTLDTTTVAHFTL 58
           S L+  +   ++ LH    +  E + + L++++ +E + TL  TTVA+F+L
Sbjct: 281 SLLKHFEPETLESLHIEILEFDEDSVKELVILDQWEEAKTLSLTTVAYFSL 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,950,072
Number of Sequences: 27780
Number of extensions: 280490
Number of successful extensions: 809
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)