Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10394
(574 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF139520-1|AAD33830.1| 176|Caenorhabditis elegans warthog prote... 29 1.8
AF000298-2|AAC48258.1| 176|Caenorhabditis elegans Warthog (hedg... 29 1.8
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 29 2.3
Z80216-11|CAN99667.1| 984|Caenorhabditis elegans Hypothetical p... 29 3.1
Z80216-10|CAB02286.4| 949|Caenorhabditis elegans Hypothetical p... 29 3.1
AL023823-2|CAN99714.1| 984|Caenorhabditis elegans Hypothetical ... 29 3.1
AL023823-1|CAA19441.4| 949|Caenorhabditis elegans Hypothetical ... 29 3.1
U41007-12|AAA82272.1| 485|Caenorhabditis elegans Nucleoside tri... 28 5.4
>AF139520-1|AAD33830.1| 176|Caenorhabditis elegans warthog protein
WRT-5 protein.
Length = 176
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 198 PSAHQFRYARCRWKSRNCSCKLHRGWRRIQTERS*GS 88
PS H+ +YA C ++ + +C + W T+ S GS
Sbjct: 48 PSCHEKKYAECPERATSTTCSTNSSWVGGVTQHSDGS 84
>AF000298-2|AAC48258.1| 176|Caenorhabditis elegans Warthog
(hedgehog-like family)protein 5, isoform a protein.
Length = 176
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 198 PSAHQFRYARCRWKSRNCSCKLHRGWRRIQTERS*GS 88
PS H+ +YA C ++ + +C + W T+ S GS
Sbjct: 48 PSCHEKKYAECPERATSTTCSTNSSWVGGVTQHSDGS 84
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 8 KTIKNEIDHRCSSRPCGYRHRCPPY-RGLP*DRSV*IRRQPRWSLQLQFRDFQRHR 172
K +KN++ +R SSR G H+ P + R LP D R+ R + Q +F+ + R
Sbjct: 2529 KFLKNKVHNRRSSRAPGIHHQRPLHPRWLPTDHET-DRKDSRAASQFRFQHMRSKR 2583
>Z80216-11|CAN99667.1| 984|Caenorhabditis elegans Hypothetical
protein F10G8.8b protein.
Length = 984
Score = 28.7 bits (61), Expect = 3.1
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Frame = +3
Query: 102 VRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYVTR---TLT 272
+R++ DA+ D + + N ++ LK + D+ ++ V +++ T+T
Sbjct: 548 LRTQLDAAKDDSARRKRDAINQEIKELRITLKSSEDELHRYRKEVDTLRRQISQNSQTVT 607
Query: 273 ---ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 386
A L LRT L+ L ++LR +LFL + L N LDR
Sbjct: 608 LQRAVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648
>Z80216-10|CAB02286.4| 949|Caenorhabditis elegans Hypothetical
protein F10G8.8a protein.
Length = 949
Score = 28.7 bits (61), Expect = 3.1
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Frame = +3
Query: 102 VRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYVTR---TLT 272
+R++ DA+ D + + N ++ LK + D+ ++ V +++ T+T
Sbjct: 548 LRTQLDAAKDDSARRKRDAINQEIKELRITLKSSEDELHRYRKEVDTLRRQISQNSQTVT 607
Query: 273 ---ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 386
A L LRT L+ L ++LR +LFL + L N LDR
Sbjct: 608 LQRAVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648
>AL023823-2|CAN99714.1| 984|Caenorhabditis elegans Hypothetical
protein F10G8.8b protein.
Length = 984
Score = 28.7 bits (61), Expect = 3.1
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Frame = +3
Query: 102 VRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYVTR---TLT 272
+R++ DA+ D + + N ++ LK + D+ ++ V +++ T+T
Sbjct: 548 LRTQLDAAKDDSARRKRDAINQEIKELRITLKSSEDELHRYRKEVDTLRRQISQNSQTVT 607
Query: 273 ---ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 386
A L LRT L+ L ++LR +LFL + L N LDR
Sbjct: 608 LQRAVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648
>AL023823-1|CAA19441.4| 949|Caenorhabditis elegans Hypothetical
protein F10G8.8a protein.
Length = 949
Score = 28.7 bits (61), Expect = 3.1
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Frame = +3
Query: 102 VRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYVTR---TLT 272
+R++ DA+ D + + N ++ LK + D+ ++ V +++ T+T
Sbjct: 548 LRTQLDAAKDDSARRKRDAINQEIKELRITLKSSEDELHRYRKEVDTLRRQISQNSQTVT 607
Query: 273 ---ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 386
A L LRT L+ L ++LR +LFL + L N LDR
Sbjct: 608 LQRAVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648
>U41007-12|AAA82272.1| 485|Caenorhabditis elegans Nucleoside
triphosphatase protein 1 protein.
Length = 485
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 213 DNKPHVIVAVRGSYVTRTLTANLKPLRTSLTRLDTML 323
+N + ++ GS TR LKPL LT +DT++
Sbjct: 21 NNIKYGVICDAGSSGTRLFVYTLKPLSGGLTNIDTLI 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,512,044
Number of Sequences: 27780
Number of extensions: 215704
Number of successful extensions: 653
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -